MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-24b
Paralogues Dno-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dre-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(dasNov3)
AAGV03195862: 467-526 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)
Mir-23-P3 AAGV03195862: 168-226 [+] UCSC Ensembl
Mir-27-P3 AAGV03195862: 315-376 [+] UCSC Ensembl
Mir-24-P3 AAGV03195862: 467-526 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCCGGGCUCCCCCGGGCUCUGCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUUGCGCAGACUGGCUCAGUUCAGCAGGAACGGGAGUCCAGCCUCCUCGGGGCCCGCGGCCCU
Get precursor sequence
Structure
        10           20        30        40        50        60
CCGCCCGGGCUCCCCCG---|   CUGC       G   A         AACA    UGGUU 
                    GGCU    CUCCCGU CCU CUGAGCUGA    CAGU     U
                    CCGA    GAGGGCA GGA GACUUGACU    GUCA     G
UCCCGGCGCCCGGGGCUCCU^   CCU-       A   C         CG--    GACGC 
.       110       100         90        80          70
Deep sequencing
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CommentAlthough not well supported by deep read data all taxa sequenced in this study show the same read pattern and better and more deeply sequenced vertebrate taxa are all clearly Group 2 miRNAs suggesting that this too is likely a Group 2 miRNA.
3' NTU Yes
MotifsNo
Tissue expression
 +
To
Star sequence

Dno-Mir-24-P3_5p*

mirBase accessionMIMAT0047534
Sequence
0- GUGCCUACUGAGCUGAAACACAGU -24
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Mature sequence

Dno-Mir-24-P3_3p

mirBase accessionMIMAT0047535
Sequence
38- UGGCUCAGUUCAGCAGGAACGG -60
Get sequence