MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-34-P3a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-449c
Paralogues Dno-Mir-34-P1  Dno-Mir-34-P2a  Dno-Mir-34-P2b  Dno-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Loc-Mir-34-P3a  Mmu-Mir-34-P3a  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ovu-Mir-34  Pbv-Mir-34-P3a  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3a  Sko-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Xbo-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(dasNov3)
JH582746: 1407143-1407205 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)
Mir-34-P3c JH582746: 1406026-1406087 [-] UCSC Ensembl
Mir-34-P3a JH582746: 1407143-1407205 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCAAAGAUGAAGCCUGGGUGUGUCAGGUAGGCAGUGCUUUGCUAGCUGGCUGUUAUAAUUUUAUUUUAACAGUUGCUAGUUGCACUCCCCUCUGUUGCAUUCAAAAGCAUUCUCCCCAAAG
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Structure
        10          20        30        40        50        60   
CAGCAAAGAUGAAGCCU--|      U    UA  C     UUU      U       AUAAUU 
                   GGGUGUG CAGG  GG AGUGC   GCUAGC GGCUGUU      \
                   CUUACGU GUCU  CC UCACG   UGAUCG UUGACAA      U
GAAACCCCUCUUACGAAAA^      U    CC  -     U--      -       UUUUAU 
 120       110       100        90           80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Dno-Mir-34-P3a_5p

mirBase accessionMIMAT0047895
Sequence
0- AGGCAGUGCUUUGCUAGCUGGCUGUU -26
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Star sequence

Dno-Mir-34-P3a_3p* (predicted)

mirBase accessionMIMAT0047896
Sequence
41- CAGUUGCUAGUUGCACUCCCCU -63
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