MirGeneDB 2.1

MirGeneDB ID

Dya-Mir-277

Family name MIR-277 (all species)
Seed AAAUGCA
Species Fruit fly (Drosophila yakuba)
MiRBase ID dya-mir-277
Paralogues
Orthologues Aae-Mir-277  Bge-Mir-277  Bpl-Mir-277  Cbr-Mir-277-P6a  Cbr-Mir-277-P6b  Cel-Mir-277  Cgi-Mir-277  Csc-Mir-277-P18a  Csc-Mir-277-P18b  Cte-Mir-277-P1  Cte-Mir-277-P2  Dan-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Efe-Mir-277  Esc-Mir-277  Hme-Mir-277  Isc-Mir-277  Lan-Mir-277-P3  Lan-Mir-277-P4  Lan-Mir-277-P5  Lgi-Mir-277  Lpo-Mir-277-P12  Lpo-Mir-277-P13  Lpo-Mir-277-P14  Lpo-Mir-277-P15  Lpo-Mir-277-P16  Lpo-Mir-277-P17  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Sme-Mir-277-P6a  Sme-Mir-277-P6b  Sme-Mir-277-P7a  Sme-Mir-277-P7b  Tca-Mir-277 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)
3R: 9973491-9973554 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-277)
Mir-317 3R: 9963987-9964052 [+] UCSC Ensembl
Mir-277 3R: 9973491-9973554 [+] UCSC Ensembl
Mir-34 3R: 9974485-9974558 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAAUGCAUCCUUUGAAGGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAACUAUCUGAAGCAUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACGUACAAUCUUCCCGAAUGCAG
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Structure
        10          20        30          40        50        60
UAAAAUGCAUCCUUUGAAG--       GC  -   GU    -|           CUGAAACU 
                     GUUUUGG  UG CGU  CAGG AGUGCAUUUGCA        A
                     CAAGACC  AC GCA  GUCU UCACGUAAAUGU        U
GACGUAAGCCCUUCUAACAUG       UU  A   UG    A^           ACGAAGUC 
  120       110       100        90        80        70
Deep sequencing
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CommentThere are several snps between the mirbase entry and this entry.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dya-Mir-277_5p*

mirBase accessionNone
Sequence
0- CGUGUCAGGAGUGCAUUUGCA -21
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Mature sequence

Dya-Mir-277_3p

mirBase accessionMIMAT0009099
Sequence
41- UAAAUGCACUAUCUGGUACGACA -64
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