MirGeneDB ID | Csc-Mir-277-P18a |
Family name |
MIR-277 (all species) |
Seed |
AAAUGCA |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-277-P18b
|
Orthologues |
Aae-Mir-277
Bge-Mir-277
Bpl-Mir-277
Cel-Mir-277
Cgi-Mir-277
Dan-Mir-277
Dma-Mir-277
Dme-Mir-277
Dmo-Mir-277
Dpu-Mir-277
Dsi-Mir-277
Dya-Mir-277
Efe-Mir-277
Esc-Mir-277
Hme-Mir-277
Isc-Mir-277
Lgi-Mir-277
Npo-Mir-277
Obi-Mir-277
Ovu-Mir-277
Tca-Mir-277
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000671375.1_CSC) |
NW_019384483.1: 601078-601139 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGUUGUCCACUCCUGGUCGCUGGUACUUUCGUUCCAGAGAUGCGUUUACAAGAGUUCUUGUAAUAUCUGUAAAUGCAUUUUCUGGAAUGAAAACUACCCACGACACAUCUUCGACACCUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGUUGUCCACUCCUGG- CU C- -| AGAGUUCU
UCG GGUA UUUCGUUCCAG AGAUGCGUUUACA \
AGC CCAU AAAGUAAGGUC UUUACGUAAAUGU U
UCUCCACAGCUUCUACAC AC CA U^ CUAUAAUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Csc-Mir-277-P18a_5p* |
mirBase accession | None |
Sequence |
0- CGUUCCAGAGAUGCGUUUACA -21
Get sequence
|
Mature sequence |
Csc-Mir-277-P18a_3p |
mirBase accession | None |
Sequence |
40- UAAAUGCAUUUUCUGGAAUGAA -62
Get sequence
|