MirGeneDB ID | Ete-Mir-130-P1c |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-130-P2b
Ete-Mir-130-P4a
|
Orthologues |
Aca-Mir-130-P1c
Ami-Mir-130-P1c
Bta-Mir-130-P1c
Cfa-Mir-130-P1c
Cpi-Mir-130-P1c
Cpo-Mir-130-P1c
Dno-Mir-130-P1c
Gja-Mir-130-P1c
Hsa-Mir-130-P1c
Lch-Mir-130-P1c
Mdo-Mir-130-P1c
Mml-Mir-130-P1c
Mmu-Mir-130-P1c
Mun-Mir-130-P1c
Oan-Mir-130-P1c
Ocu-Mir-130-P1c
Pbv-Mir-130-P1c
Rno-Mir-130-P1c
Sha-Mir-130-P1c
Spt-Mir-130-P1c
Sto-Mir-130-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980388: 1501865-1501926 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CAGAGCCGGCCGCCUCUGCUGCUGGCCAGAGCUCUUUUCACAUUGUGCUACUGUCUGCACCGAUCACUAGCAGUGCAAUGUUAAAAGGGCAUUGGCCGGGUAGUGCUACCCAGCGUUGGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGAGCCGGCCGCCUCU- -| A C UG A GUCUGCA
GCUG CUGGCCAG GCUCUUUU ACAUUG CU CU C
UGAU GGCCGGUU CGGGAAAA UGUAAC GA GA C
GUCGGUUGCGACCCAUCG G^ A U GU C UCACUAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' moR reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Ete-Mir-130-P1c_5p* |
mirBase accession | None |
Sequence |
0- GCUCUUUUCACAUUGUGCUACU -22
Get sequence
|
Mature sequence |
Ete-Mir-130-P1c_3p |
mirBase accession | None |
Sequence |
40- CAGUGCAAUGUUAAAAGGGCAU -62
Get sequence
|