MirGeneDB ID | Ete-Mir-130-P2b |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-130-P1c
Ete-Mir-130-P4a
|
Orthologues |
Aca-Mir-130-P2b
Ami-Mir-130-P2b
Bta-Mir-130-P2b
Cfa-Mir-130-P2b
Cli-Mir-130-P2b
Cmi-Mir-130-P2b
Cpi-Mir-130-P2b
Cpo-Mir-130-P2b
Dno-Mir-130-P2b
Dre-Mir-130-P2b1
Gga-Mir-130-P2b
Gja-Mir-130-P2b
Gmo-Mir-130-P2b1
Hsa-Mir-130-P2b
Lch-Mir-130-P2b
Loc-Mir-130-P2b
Mal-Mir-130-P2b2
Mdo-Mir-130-P2b
Mml-Mir-130-P2b
Mmu-Mir-130-P2b
Mun-Mir-130-P2b
Oan-Mir-130-P2b
Ocu-Mir-130-P2b
Pbv-Mir-130-P2b
Rno-Mir-130-P2b
Sha-Mir-130-P2b
Spt-Mir-130-P2b
Sto-Mir-130-P2b
Tgu-Mir-130-P2b
Xla-Mir-130-P2b3
Xla-Mir-130-P2b4
Xtr-Mir-130-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980319: 15247653-15247714 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UUUCUUUCCUAUUUAUUACUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGGAAGCACACCAGAAUUUGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUCUUUCCUAUUUAUUA-- AA A C U---| A GUACUU
CUGCU CG AUGCU UGAC UUAUUGCACU CU \
GACGA GU UACGA ACUG GAUAACGUGA GA U
AGGUUUAAGACCACACGAAG AA C A UUAU^ C UCGACA
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-130-P2b_5p* |
mirBase accession | None |
Sequence |
0- GCUCUGACUUUAUUGCACUACU -22
Get sequence
|
Mature sequence |
Ete-Mir-130-P2b_3p |
mirBase accession | None |
Sequence |
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
Get sequence
|