MirGeneDB ID | Ete-Mir-15-P2b |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-15-P1a
Ete-Mir-15-P1b
Ete-Mir-15-P1c
Ete-Mir-15-P1d
Ete-Mir-15-P2a
Ete-Mir-15-P2c
Ete-Mir-15-P2d
|
Orthologues |
Aca-Mir-15-P2b
Ami-Mir-15-P2b
Bta-Mir-15-P2b
Cfa-Mir-15-P2b
Cin-Mir-15-P2
Cli-Mir-15-P2b
Cmi-Mir-15-P2b
Cpi-Mir-15-P2b
Cpo-Mir-15-P2b
Dno-Mir-15-P2b
Dre-Mir-15-P2b
Gga-Mir-15-P2b
Gja-Mir-15-P2b
Gmo-Mir-15-P2b
Hsa-Mir-15-P2b
Lch-Mir-15-P2b
Loc-Mir-15-P2b
Mal-Mir-15-P2b
Mdo-Mir-15-P2b
Mml-Mir-15-P2b
Mmu-Mir-15-P2b
Mun-Mir-15-P2b
Oan-Mir-15-P2b
Ocu-Mir-15-P2b
Pbv-Mir-15-P2b
Rno-Mir-15-P2b
Sha-Mir-15-P2b
Spt-Mir-15-P2b
Sto-Mir-15-P2b
Tgu-Mir-15-P2b
Tni-Mir-15-P2b
Xla-Mir-15-P2b1
Xla-Mir-15-P2b2
Xtr-Mir-15-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (echTel2) |
JH980310: 44226221-44226285 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UUUGGAUGGACUGACAUACUUGUUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGGAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGACAGGGUUAUAGCAACUAUUUUAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUGGAUGGACUGACAUA--| UC CU UA C AGUGGAAU
CUUGU CGCU AGCAGCACG AAUAUUGG GU \
GGACA GUGA UCGUCGUGU UUAUAACC CA A
CUAUUUUAUCAACGAUAUUG^ GU UU UA A AAUUAUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-15-P2b_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACGUAAAUAUUGGCGU -23
Get sequence
|
Star sequence |
Ete-Mir-15-P2b_3p* |
mirBase accession | None |
Sequence |
42- ACCAAUAUUAUUGUGCUGCUUUA -65
Get sequence
|