MirGeneDB ID | Ete-Mir-217-v1 |
Family name |
MIR-217 (all species) |
Seed |
ACUGCAU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-217-v2
|
Orthologues |
Aca-Mir-217-v1
Ami-Mir-217-v1
Bfl-Mir-217
Bla-Mir-217
Bta-Mir-217-v1
Cfa-Mir-217-v1
Cli-Mir-217-v1
Cmi-Mir-217
Cpi-Mir-217-v1
Cpo-Mir-217-v1
Dno-Mir-217-v1
Dre-Mir-217-v1
Gga-Mir-217-v1
Gja-Mir-217-v1
Gmo-Mir-217
Hsa-Mir-217-v1
Lch-Mir-217
Loc-Mir-217
Mal-Mir-217
Mdo-Mir-217
Mml-Mir-217-v1
Mmu-Mir-217-v1
Mun-Mir-217-v1
Oan-Mir-217-v1
Ocu-Mir-217-v1
Pbv-Mir-217-v1
Rno-Mir-217-v1
Sha-Mir-217-v1
Spt-Mir-217
Sto-Mir-217-v1
Tgu-Mir-217-v1
Tni-Mir-217
Xtr-Mir-217-v1
|
Node of Origin (locus) |
Chordata
|
Node of Origin (family) |
Chordata
|
Genome context (echTel2) |
JH980337: 15887003-15887061 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AACGUCACAAAGAGCUUUUGAUGUUGCAGGUACUGCAUCAGGAACUGAUCGGAUAAGUAUCUGUCACCAUCAGUUCCUAAUGCACUGCCUUCAGCAUCUAACUGAGCUUCAGGAAACAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AACGUCACAAAGAGCUUUU--| C C C C AUAAGU
GAUGUUG AGGUA UGCAU AGGAACUGAU GG A
CUACGAC UCCGU ACGUA UCCUUGACUA CC U
CACAAAGGACUUCGAGUCAAU^ U C A - ACUGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a one nt mismatch between the reads and the genomic sequence the 3' end of the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-217-v1_5p |
mirBase accession | None |
Sequence |
0- UACUGCAUCAGGAACUGAUCGGA -23
Get sequence
|
Star sequence |
Ete-Mir-217-v1_3p* |
mirBase accession | None |
Sequence |
37- CAUCAGUUCCUAAUGCACUGCC -59
Get sequence
|