MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(echTel2)
JH980365: 7503744-7503807 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGGUGUUGGGAUGUGAAGUUGUUCCUCAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUCCUUACUUCUGCCAUUGCA
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Structure
        10        20          30        40         50        60 
GGGUGUUGGGAUGUGAAGUUGUU-  -   AU              -|    AUCCUGUCUUU 
                        CC UCA  GGCUCAGUAGCCAG UGUAG           \
                        GG AGU  CUGGGUCAUCGGUC ACAUC           U
ACGUUACCGUCUUCAUUCCUCUAC  U   CU              U^    GACGACUAAUG 
  120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut +2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Ete-Mir-221-P1a_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCUCAGUAGCCAGUGUAGAUCC -23
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Mature sequence

Ete-Mir-221-P1a_3p

mirBase accessionNone
Sequence
40- AGCUACAUCUGGCUACUGGGUCUC -64
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