MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-30-P1a  Ete-Mir-30-P1b  Ete-Mir-30-P1d  Ete-Mir-30-P2a  Ete-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(echTel2)
JH980293: 89870783-89870844 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GUGUCUUAGAGCGGACUGAGUGACAGAUACUGUAAACAUCCCACACUCUCCGCUGUGCAAAGCCAGAAAGCCGAGAGAAGGCUGUUUACUCUUUCUGCCUUGGAAAUCAGCUAAAGAGCCAC
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Structure
        10            20        30        40        50        60 
GUGUCUUAGAGCGGACU----|  UGA    UACU       U  CACA     C   GUGCAA 
                     GAG   CAGA    GUAAACA CC    CUCUC GCU      A
                     UUC   GUCU    CAUUUGU GG    GAGAG CGA      G
CACCGAGAAAUCGACUAAAGG^  C--    UUCU       C  AA--     C   AAGACC 
120       110       100          90        80          70
Deep sequencing
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CommentThere is a one nt difference between the genomic read and the actual 5p read from the small RNA library (UGUAAACAUCCCACACUCUCAGCU).
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Ete-Mir-30-P2b_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCCACACUCUCCGCU -24
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Star sequence

Ete-Mir-30-P2b_3p* (predicted)

mirBase accessionNone
Sequence
40- CCGAGAGAAGGCUGUUUACUCU -62
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