MirGeneDB ID | Ete-Mir-431 |
Family name |
MIR-431 (all species) |
Seed |
GUCUUGC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-431
Cfa-Mir-431
Cpo-Mir-431
Hsa-Mir-431
Mml-Mir-431
Mmu-Mir-431
Ocu-Mir-431
Rno-Mir-431
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82400847-82400910 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCACUGCUCUCUCUUGGUCGUCCUGCGGGCUGUCUUGCAGGCCGUCAUGCAGGCCACCUUGACGGUAACGUUGCAGGUCGCCCUGCCGGGCUUCUCGCAAGACGACAUCCUCGUCGUUCACAAU
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|
Structure | 10 20 30 40 50 60
GCACUGCUCUCUCUUGG--| C CU U C UCA GGCCACCUU
UCGUC UGCGGG GUCU GCAGG CG UGCA G
AGCAG ACGCUC CGGG CGUCC GC ACGU A
UAACACUUGCUGCUCCUAC^ A UU C C UGG UGCAAUGGC
120 110 100 90 80 70 |
Deep sequencing |
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|
Comment | There is a second Dicer cut +3 on the 3p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-431_5p |
mirBase accession | None |
Sequence |
0- UGUCUUGCAGGCCGUCAUGCA -21
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|
Co-mature sequence |
Ete-Mir-431_3p |
mirBase accession | None |
Sequence |
43- CAGGUCGCCCUGCCGGGCUUC -64
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