MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-125a
Paralogues Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Mmu-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v2  Mmu-Mir-10-P2b  Mmu-Mir-10-P2c  Mmu-Mir-10-P2d  Mmu-Mir-10-P3c  Mmu-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(mm10)
chr17: 17830817-17830876 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b)
Mir-10-P2b chr17: 17830194-17830253 [+] UCSC Ensembl
Let-7-P1b chr17: 17830366-17830432 [+] UCSC Ensembl
Mir-10-P3b chr17: 17830817-17830876 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCACCAUAGCUACACUGCCGGCCUCUGGGUCCCUGAGACCCUUUAACCUGUGAGGACGUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGCCUGGCCCAGCCACAAAUUUAGGGA
Get precursor sequence
Structure
        10          20         30        40        50        60
UCCACCAUAGCUACACU--   -|  CU UG  UC  UG   C    UA        GGACG 
                   GCC GGC  C  GG  CC  AGA CCUU  ACCUGUGA     U
                   CGG CCG  G  CC  GG  UCU GGAG  UGGACACU     C
AGGGAUUUAAACACCGACC   U^  C- GU  GA  GU   U    --        GGGAC 
.       110       100         90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-10-P3b_5p

mirBase accessionMIMAT0000135
Sequence
0- UCCCUGAGACCCUUUAACCUGUGA -24
Get sequence
Proposed targets microrna.org: MIMAT0000135
TargetScanVert: mmu-miR-125a-5p
miRDB: MIMAT0000135
Star sequence

Mmu-Mir-10-P3b_3p*

mirBase accessionMIMAT0004528
Sequence
38- ACAGGUGAGGUUCUUGGGAGCC -60
Get sequence
Proposed targets microrna.org: MIMAT0004528
TargetScanVert: mmu-miR-125a-3p
miRDB: MIMAT0004528