Mir-124-P2-v1

MirGeneDB ID

Mmu-Mir-124-P2-v1

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-124-1

Paralogues

Mmu-Mir-124-P1-v1 Mmu-Mir-124-P1-v2 Mmu-Mir-124-P2-v2 Mmu-Mir-124-P3-v1 Mmu-Mir-124-P3-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P2-v1 Aca-Mir-124-P2-v2 Ami-Mir-124-P2-v1 Ami-Mir-124-P2-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bla-Mir-124 Bta-Mir-124-P2-v1 Bta-Mir-124-P2-v2 Cel-Mir-124 Cfa-Mir-124-P2-v1 Cfa-Mir-124-P2-v2 Cmi-Mir-124-P2-v1 Cmi-Mir-124-P2-v2 Cpi-Mir-124-P2-v1 Cpi-Mir-124-P2-v2 Cpo-Mir-124-P2-v1 Cpo-Mir-124-P2-v2 Cte-Mir-124 Dan-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P2-v1 Dno-Mir-124-P2-v2 Dpu-Mir-124 Dre-Mir-124-P2a-v1 Dre-Mir-124-P2a-v2 Dsi-Mir-124 Dya-Mir-124 Esc-Mir-124 Ete-Mir-124-P2-v1 Ete-Mir-124-P2-v2 Gga-Mir-124-P2-v1 Gga-Mir-124-P2-v2 Gja-Mir-124-P2-v1 Gja-Mir-124-P2-v2 Hme-Mir-124 Hsa-Mir-124-P2-v1 Hsa-Mir-124-P2-v2 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P2 Loc-Mir-124-P2-v1 Loc-Mir-124-P2-v2 Mal-Mir-124-P2a-v1 Mal-Mir-124-P2a-v2 Mdo-Mir-124-P2-v1 Mdo-Mir-124-P2-v2 Mml-Mir-124-P2-v1 Mml-Mir-124-P2-v2 Mun-Mir-124-P2-v1 Mun-Mir-124-P2-v2 Npo-Mir-124 Obi-Mir-124 Ocu-Mir-124-P2-v1 Ocu-Mir-124-P2-v2 Ovu-Mir-124 Pbv-Mir-124-P2-v1 Pbv-Mir-124-P2-v2 Pfl-Mir-124 Pma-Mir-124-o2 Pmi-Mir-124 Rno-Mir-124-P2-v1 Rno-Mir-124-P2-v2 Sha-Mir-124-P2-v1 Sha-Mir-124-P2-v2 Sko-Mir-124 Spt-Mir-124-P2 Spu-Mir-124 Sto-Mir-124-P2-v1 Sto-Mir-124-P2-v2 Tca-Mir-124 Tgu-Mir-124-P2-v1 Tgu-Mir-124-P2-v2 Tni-Mir-124-P2a-v1 Tni-Mir-124-P2a-v2 Tni-Mir-124-P2b-v1 Tni-Mir-124-P2b-v2 Xbo-Mir-124 Xla-Mir-124-P2c-v1 Xla-Mir-124-P2c-v2 Xla-Mir-124-P2d-v1 Xla-Mir-124-P2d-v2 Xtr-Mir-124-P2-v1 Xtr-Mir-124-P2-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr14: 64590670-64590730 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P2-v1)

Mir-124-P2-v1 chr14: 64590670-64590730 [+] UCSC Ensembl
Mir-124-P2-v2 chr14: 64590670-64590729 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCUUCCUCAGGAGAAAGGCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCUGUCUGAGCACCUUGGGUCCA

Get precursor sequence

Structure

        10          20        30        40        50          
UUCCUUCCUCAGGAGAAA--|     UC   CC        A   GA       UUAAAUG 
                    GGCCUC  UCU  GUGUUCAC GCG  CCUUGAU       \
                    UCGGGG  AGA  CGUAAGUG CGC  GGAAUUA       U
ACCUGGGUUCCACGAGUCUG^     UA   AC        G   AC       ACAUACC 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-124-P2-v1_5p*

mirBase accession

MIMAT0004527

Sequence

0- CGUGUUCACAGCGGACCUUGAU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004527
TargetScanVert: mmu-miR-124-5p
miRDB: MIMAT0004527

Mature sequence

Mmu-Mir-124-P2-v1_3p

mirBase accession

MIMAT0000134

Sequence

39- UAAGGCACGCGGUGAAUGCCAA -61

Get sequence

Proposed targets

microrna.org: MIMAT0000134
TargetScanVert: mmu-miR-124-3p.1
miRDB: MIMAT0000134