Mir-154-P3a-v1

MirGeneDB ID

Mmu-Mir-154-P3a-v1

Family name

MIR-154 (all species)

Seed

ACAUUAC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-323

Paralogues

Mmu-Mir-154-P1 Mmu-Mir-154-P2-v1 Mmu-Mir-154-P2-v2 Mmu-Mir-154-P3a-v2 Mmu-Mir-154-P4-o1 Mmu-Mir-154-P5 Mmu-Mir-154-P6 Mmu-Mir-154-P7 Mmu-Mir-154-P8 Mmu-Mir-154-P9 Mmu-Mir-154-P10 Mmu-Mir-154-P12 Mmu-Mir-154-P13 Mmu-Mir-154-P14 Mmu-Mir-154-P15 Mmu-Mir-154-P17 Mmu-Mir-154-P18 Mmu-Mir-154-P19 Mmu-Mir-154-P20-v1 Mmu-Mir-154-P20-v2 Mmu-Mir-154-P21 Mmu-Mir-154-P22 Mmu-Mir-154-P26 Mmu-Mir-154-P29-v1 Mmu-Mir-154-P29-v2 Mmu-Mir-154-P30 Mmu-Mir-154-P34 Mmu-Mir-154-P36

Orthologues

Bta-Mir-154-P3a-v1 Bta-Mir-154-P3a-v2 Cfa-Mir-154-P3a-v1 Cfa-Mir-154-P3a-v2 Cpo-Mir-154-P3a-v1 Cpo-Mir-154-P3a-v2 Dno-Mir-154-P3a-v1 Dno-Mir-154-P3a-v2 Ete-Mir-154-P3a-v1 Ete-Mir-154-P3a-v2 Hsa-Mir-154-P3a-v1 Hsa-Mir-154-P3a-v2 Mml-Mir-154-P3a-v1 Mml-Mir-154-P3a-v2 Ocu-Mir-154-P3a-v1 Ocu-Mir-154-P3a-v2 Rno-Mir-154-P3a-v1 Rno-Mir-154-P3a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(mm10)

chr12: 109712523-109712578 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P3a-v1)

Mir-154-P7 chr12: 109709065-109709122 [+] UCSC Ensembl
Mir-154-P13 chr12: 109710190-109710245 [+] UCSC Ensembl
Mir-154-P2-v1 chr12: 109710643-109710697 [+] UCSC Ensembl
Mir-154-P2-v2 chr12: 109710644-109710696 [+] UCSC Ensembl
Mir-154-P8 chr12: 109711806-109711862 [+] UCSC Ensembl
Mir-154-P30 chr12: 109712361-109712416 [+] UCSC Ensembl
Mir-154-P3a-v1 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P3a-v2 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P26 chr12: 109712823-109712880 [+] UCSC Ensembl
Mir-154-P4-o1 chr12: 109713503-109713562 [+] UCSC Ensembl
Mir-154-P18 chr12: 109715334-109715389 [+] UCSC Ensembl
Mir-154-P29-v1 chr12: 109715715-109715771 [+] UCSC Ensembl
Mir-154-P29-v2 chr12: 109715716-109715770 [+] UCSC Ensembl
Mir-666 chr12: 109717103-109717163 [+] UCSC Ensembl
Mir-154-P22 chr12: 109717268-109717326 [+] UCSC Ensembl
Mir-154-P19 chr12: 109718757-109718816 [+] UCSC Ensembl
Mir-667 chr12: 109720020-109720083 [+] UCSC Ensembl
Mir-376-P4 chr12: 109722733-109722790 [+] UCSC Ensembl
Mir-376-P2 chr12: 109723471-109723528 [+] UCSC Ensembl
Mir-376-P1 chr12: 109723787-109723844 [+] UCSC Ensembl
Mir-154-P34 chr12: 109724322-109724384 [+] UCSC Ensembl
Mir-154-P9 chr12: 109726829-109726891 [+] UCSC Ensembl
Mir-154-P17 chr12: 109727346-109727403 [+] UCSC Ensembl
Mir-154-P21 chr12: 109728136-109728197 [+] UCSC Ensembl
Mir-544 chr12: 109729335-109729391 [+] UCSC Ensembl
Mir-154-P10 chr12: 109733781-109733838 [+] UCSC Ensembl
Mir-134 chr12: 109734145-109734205 [+] UCSC Ensembl
Mir-154-P15 chr12: 109734910-109734968 [+] UCSC Ensembl
Mir-154-P1 chr12: 109738438-109738495 [+] UCSC Ensembl
Mir-154-P20-v2 chr12: 109739132-109739187 [+] UCSC Ensembl
Mir-154-P20-v1 chr12: 109739132-109739187 [+] UCSC Ensembl
Mir-154-P6 chr12: 109740515-109740574 [+] UCSC Ensembl
Mir-541 chr12: 109742422-109742487 [+] UCSC Ensembl
Mir-154-P36 chr12: 109743172-109743225 [+] UCSC Ensembl
Mir-154-P14 chr12: 109743303-109743358 [+] UCSC Ensembl
Mir-154-P5 chr12: 109743431-109743486 [+] UCSC Ensembl
Mir-154-P12 chr12: 109743729-109743784 [+] UCSC Ensembl
Mir-3072 chr12: 109747893-109747949 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUACUGCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUCAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCGGUAUCUAAUCCCGCCUUGCGAGCUU

Get precursor sequence

Structure

        10           20        30         40              50    
UCCUACUGCUGCUGCUU---     U  G        -  U     ------|   GUUCGCU 
                    GGUAC UG AGAGAGGU GG CCGUG      GCGC       U
                    CUAUG GC UUUCUCCA CU GGCAC      CGCG       C
UUCGAGCGUUCCGCCCUAAU     -  G        G  -     AUUACA^   GUAUUUA 
    110       100         90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut on the 3p arm -1.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-154-P3a-v1_5p*

mirBase accession

MIMAT0004638

Sequence

0- AGGUGGUCCGUGGCGCGUUCG -21

Get sequence

Proposed targets

microrna.org: MIMAT0004638
TargetScanVert: mmu-miR-323-5p
miRDB: MIMAT0004638

Mature sequence

Mmu-Mir-154-P3a-v1_3p

mirBase accession

MIMAT0000551

Sequence

35- CACAUUACACGGUCGACCUCU -56

Get sequence

Proposed targets

microrna.org: MIMAT0000551
TargetScanVert: mmu-miR-323-3p
miRDB: MIMAT0000551