MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-19b-2
Paralogues Mmu-Mir-19-P1a  Mmu-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mun-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chrX: 52741991-52742056 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c chrX: 52741697-52741761 [-] UCSC Ensembl
Mir-92-P1c chrX: 52741853-52741913 [-] UCSC Ensembl
Mir-19-P2c chrX: 52741991-52742056 [-] UCSC Ensembl
Mir-17-P4c chrX: 52742121-52742181 [-] UCSC Ensembl
Mir-17-P2c chrX: 52742341-52742403 [-] UCSC Ensembl
Mir-17-P1c chrX: 52742505-52742563 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAGCGCAAGGACAUUGCUACUUACGAUUAGUUUUGCAGAUUUGCAGUUCAGCGUAUAUGUGAAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGGGAAUGUGUACCUUUCUGCAUCGUA
Get precursor sequence
Structure
        10        20          30          40        50        60   
UACAGCGCAAGGACAUUGCUA--                  --|       GUU    GUAUAUGU 
                       CUUACGAUUAGUUUUGCA  GAUUUGCA   CAGC        \
                       GGGUGUUAGUCAAAACGU  CUAAACGU   GUCG        G
AUGCUACGUCUUUCCAUGUGUAA                  AC^       ---    GUAUAUAA 
    120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-19-P2c_5p*

mirBase accessionMIMAT0017010
Sequence
0- AGUUUUGCAGAUUUGCAGUUCAGC -24
Get sequence
Proposed targets TargetScanVert: mmu-miR-19b-2-5p
miRDB: MIMAT0017010
Mature sequence

Mmu-Mir-19-P2c_3p

mirBase accessionMIMAT0000513
Sequence
43- UGUGCAAAUCCAUGCAAAACUGA -66
Get sequence
Proposed targets microrna.org: MIMAT0000513
TargetScanVert: mmu-miR-19b-3p
miRDB: MIMAT0000513