Mir-199-P2-v2

MirGeneDB ID

Mmu-Mir-199-P2-v2

Family name

MIR-199 (all species)

Seed

ACAGUAG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-199b

Paralogues

Mmu-Mir-199-P1-v1 Mmu-Mir-199-P1-v2 Mmu-Mir-199-P1-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v3 Mmu-Mir-199-P3-v1 Mmu-Mir-199-P3-v2 Mmu-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Bta-Mir-199-P2-v1 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Cfa-Mir-199-P2-v1 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cli-Mir-199-P2-v1 Cli-Mir-199-P2-v2 Cli-Mir-199-P2-v3 Cmi-Mir-199-P2-v1 Cmi-Mir-199-P2-v2 Cmi-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dno-Mir-199-P2-v1 Dno-Mir-199-P2-v2 Dno-Mir-199-P2-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v2 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Gga-Mir-199-P2-v1 Gga-Mir-199-P2-v2 Gga-Mir-199-P2-v3 Gja-Mir-199-P2-v1 Gja-Mir-199-P2-v2 Gja-Mir-199-P2-v3 Gmo-Mir-199-P2a-v1 Gmo-Mir-199-P2a-v2 Gmo-Mir-199-P2a-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Loc-Mir-199-P2-v2 Mal-Mir-199-P2a-v1 Mal-Mir-199-P2a-v2 Mal-Mir-199-P2a-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v2 Mml-Mir-199-P2-v3 Oan-Mir-199-P2-v1 Oan-Mir-199-P2-v2 Oan-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Pbv-Mir-199-P2-v1 Pbv-Mir-199-P2-v2 Pbv-Mir-199-P2-v3 Pma-Mir-199-o2-v1 Pma-Mir-199-o2-v2 Pma-Mir-199-o2-v3 Rno-Mir-199-P2-v1 Rno-Mir-199-P2-v2 Rno-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Sto-Mir-199-P2-v2 Sto-Mir-199-P2-v3 Tgu-Mir-199-P2-v1 Tgu-Mir-199-P2-v2 Tgu-Mir-199-P2-v3 Tni-Mir-199-P2a-v1 Tni-Mir-199-P2a-v2 Tni-Mir-199-P2a-v3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr2: 32318485-32318545 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2-v2)

Mir-199-P2-v1 chr2: 32318485-32318545 [+] UCSC Ensembl
Mir-199-P2-v2 chr2: 32318485-32318545 [+] UCSC Ensembl
Mir-199-P2-v3 chr2: 32318485-32318545 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGAUACCUCCACUCCGUCUACCCAGUGUUUAGACUACCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCACCGU

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGAUACC-    CU  -|    C       U        C   U  GGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUAC UGU CA     C
                  GGGU  GG CGGAU GGUUACA GUCUGAUG ACA GU     C
UGCCACGGCUCCCAGAUU    CG  U^    U       C        -   U  UAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-199-P2-v2_5p*

mirBase accession

MIMAT0000672

Sequence

0- CCCAGUGUUUAGACUACCUGUUCA -24

Get sequence

Proposed targets

microrna.org: MIMAT0000672
TargetScanVert: mmu-miR-199b-5p
miRDB: MIMAT0000672

Mature sequence

Mmu-Mir-199-P2-v2_3p

mirBase accession

MIMAT0004667

Sequence

38- UACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Proposed targets

microrna.org: MIMAT0004667
TargetScanVert: mmu-miR-199b-3p
miRDB: MIMAT0004667