MirGeneDB ID | Spt-Mir-7-P2 |
---|---|
Family name | MIR-7 (all species) |
Seed | GGAAGAC |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-7-P1 Spt-Mir-7-P3 Spt-Mir-7-P4 |
Orthologues | Aae-Mir-7 Aca-Mir-7-P2 Ami-Mir-7-P2 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P2 Cfa-Mir-7-P2 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P2 Cmi-Mir-7-P2 Cpi-Mir-7-P2 Cpo-Mir-7-P2 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P2 Dre-Mir-7-P2b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P2 Gga-Mir-7-P2c Gga-Mir-7-P2d Gja-Mir-7-P2 Gmo-Mir-7-P2a Hme-Mir-7 Hsa-Mir-7-P2 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P2 Lgi-Mir-7 Loc-Mir-7-P2 Lpo-Mir-7 Mal-Mir-7-P2a Mdo-Mir-7-P2 Mml-Mir-7-P2 Mmu-Mir-7-P2 Mun-Mir-7-P2 Npo-Mir-7 Oan-Mir-7-P2 Obi-Mir-7 Ocu-Mir-7-P2 Ovu-Mir-7 Pbv-Mir-7-P2 Pfl-Mir-7 Pma-Mir-7-o2 Pmi-Mir-7 Rno-Mir-7-P2 Sha-Mir-7-P2 Sko-Mir-7 Spu-Mir-7 Sto-Mir-7-P2 Tca-Mir-7 Tgu-Mir-7-P2 Xbo-Mir-7 Xla-Mir-7-P2e Xla-Mir-7-P2f Xtr-Mir-7-P2 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01008874.1: 1907563-1907626 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAUUUCAGUGGAUGUUGGUUUAGUUCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGAUAACUAAAUCGACAACAAAUUGCAGUCUGCCAUAUGGCACAGACCAUGCCUCUACAGGACAAGUGet precursor sequence |
Structure | 10 20 30 40 50 60 GAUUUCAGUGGAUGUUG---| A U A A UG U UUUAGAU GUUU GU CUGUGUGG AGACU G AUUU GUUGUU A CAGA CA GGUAUACC UCUGA C UAAA CAACAG A UGAACAGGACAUCUCCGUAC^ - C G - GU - CUAAAUC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Spt-Mir-7-P2_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
Star sequence | Spt-Mir-7-P2_3p* (predicted) |
mirBase accession | None |
Sequence |
42- CAACAAAUUGCAGUCUGCCAUA -64
Get sequence
|