MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-7

Family name

MIR-7 (all species)

Seed

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-7

Paralogues

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aca-Mir-7-P2 Aca-Mir-7-P4 Ami-Mir-7-P1 Ami-Mir-7-P2 Ami-Mir-7-P3 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bpl-Mir-7-P18 Bpl-Mir-7-P19 Bta-Mir-7-P1 Bta-Mir-7-P2 Bta-Mir-7-P4 Cfa-Mir-7-P1 Cfa-Mir-7-P2 Cfa-Mir-7-P4 Cgi-Mir-7 Cli-Mir-7-P1 Cli-Mir-7-P2 Cli-Mir-7-P3 Cli-Mir-7-P4 Cmi-Mir-7-P1 Cmi-Mir-7-P2 Cmi-Mir-7-P4 Cpi-Mir-7-P1 Cpi-Mir-7-P2 Cpi-Mir-7-P3 Cpi-Mir-7-P4 Cpo-Mir-7-P1 Cpo-Mir-7-P2 Cpo-Mir-7-P4 Csc-Mir-7-P14 Csc-Mir-7-P15 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dno-Mir-7-P2 Dno-Mir-7-P4 Dpu-Mir-7-P9 Dpu-Mir-7-P10 Dre-Mir-7-P1a Dre-Mir-7-P1b Dre-Mir-7-P2b Dre-Mir-7-P3 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Ebu-Mir-7-P5 Ebu-Mir-7-P6 Ebu-Mir-7-P7 Ebu-Mir-7-P8 Efe-Mir-7-P11 Efe-Mir-7-P12 Efe-Mir-7-P13 Esc-Mir-7 Ete-Mir-7-P1 Ete-Mir-7-P2 Ete-Mir-7-P4 Gga-Mir-7-P1 Gga-Mir-7-P2c Gga-Mir-7-P2d Gga-Mir-7-P4 Gja-Mir-7-P1 Gja-Mir-7-P2 Gja-Mir-7-P4 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gmo-Mir-7-P2a Gmo-Mir-7-P3 Gmo-Mir-7-P4a Hme-Mir-7 Hsa-Mir-7-P1 Hsa-Mir-7-P2 Hsa-Mir-7-P4 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P1 Lch-Mir-7-P2 Lch-Mir-7-P3 Lch-Mir-7-P4 Lgi-Mir-7 Loc-Mir-7-P1 Loc-Mir-7-P2 Loc-Mir-7-P3 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mal-Mir-7-P1a Mal-Mir-7-P2a Mal-Mir-7-P3 Mal-Mir-7-P4a Mdo-Mir-7-P1 Mdo-Mir-7-P2 Mdo-Mir-7-P4 Mml-Mir-7-P1 Mml-Mir-7-P2 Mml-Mir-7-P4 Mmu-Mir-7-P1 Mmu-Mir-7-P2 Mmu-Mir-7-P4 Mun-Mir-7-P1e Mun-Mir-7-P1f Mun-Mir-7-P2 Mun-Mir-7-P3 Mun-Mir-7-P4 Npo-Mir-7 Oan-Mir-7-P1 Oan-Mir-7-P2 Obi-Mir-7 Ocu-Mir-7-P1 Ocu-Mir-7-P2 Ocu-Mir-7-P4 Ovu-Mir-7 Pbv-Mir-7-P1 Pbv-Mir-7-P2 Pbv-Mir-7-P4 Pfl-Mir-7 Pma-Mir-7-o1 Pma-Mir-7-o2 Pma-Mir-7-o3 Pma-Mir-7-o4 Pmi-Mir-7 Rno-Mir-7-P1 Rno-Mir-7-P2 Rno-Mir-7-P4 Sha-Mir-7-P1 Sha-Mir-7-P2 Sha-Mir-7-P4 Sko-Mir-7 Sme-Mir-7-P20 Sme-Mir-7-P21 Sme-Mir-7-P22 Sme-Mir-7-P23 Spt-Mir-7-P1 Spt-Mir-7-P2 Spt-Mir-7-P3 Spt-Mir-7-P4 Spu-Mir-7 Sto-Mir-7-P1 Sto-Mir-7-P2 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P1 Tgu-Mir-7-P2 Tgu-Mir-7-P4 Tni-Mir-7-P3 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xla-Mir-7-P2e Xla-Mir-7-P2f Xla-Mir-7-P3a Xla-Mir-7-P3b Xtr-Mir-7-P1 Xtr-Mir-7-P2 Xtr-Mir-7-P3

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(ci3)

1: 1104842-1104894 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACAACUCCUGCAACAUAUCCGCACCCGGUUGGAAGACUAGUGAUUUUGUUGUUAUAGCAACAACAAUCUAUGGUCUCCUGCACGGAAGUGGAAACUAACAACGGUUUUGUCG

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Structure

        10          20         30        40         50     
UACAACUCCUGCAACAUA--     AC   -| U   A     GU    -      UU 
                    UCCGC  CCG GU GGA GACUA  GAUU UUGUUG  A
                    AGGUG  GGC CG CCU CUGGU  CUAA AACAAC  U
GCUGUUUUGGCAACAAUCAA     AA   A^ U   -     AU    C      GA 
 110       100        90        80         70        60

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Ga	La	La

Mature sequence

Cin-Mir-7_5p

mirBase accession

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Star sequence

Cin-Mir-7_3p*

mirBase accession

Sequence

31- CAACAAUCUAUGGUCUCCUGCA -53

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