MirGeneDB ID | Bge-Mir-2-P3 |
Family name |
MIR-2 (all species) |
Seed |
AGUCAAA |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Bge-Mir-2-P2
Bge-Mir-2-P4c-v1
Bge-Mir-2-P4c-v2
Bge-Mir-2-P4d-v1
Bge-Mir-2-P4d-v2
Bge-Mir-2-P7
|
Orthologues |
Aae-Mir-2-P3
Cbr-Mir-2-o3
Cel-Mir-2-o3
Csc-Mir-2-P3n
Csc-Mir-2-P3o
Dan-Mir-2-P3a-v1
Dan-Mir-2-P3a-v2
Dan-Mir-2-P3b
Dma-Mir-2-P3
Dme-Mir-2-P3a
Dme-Mir-2-P3b
Dmo-Mir-2-P3b
Dpu-Mir-2-P3
Dsi-Mir-2-P3a
Dsi-Mir-2-P3b
Dya-Mir-2-P3a
Dya-Mir-2-P3b
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Lpo-Mir-2-P3g
Lpo-Mir-2-P3h
Lpo-Mir-2-P3i
Lpo-Mir-2-P3k
Lpo-Mir-2-P3l
Lpo-Mir-2-P3m
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
Arthropoda
|
Node of Origin (family) |
Protostomia
|
Genome context (Bger_2.0) |
KZ615436.1: 353858-353916 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAGAAAUCAGCCUGUCCCUAUGUCCCAACAGUCAAAAUGACUGUGAUGUGUAGAUUUAAGUCAUAUCACAGCCAUUUUUGACGAGUUGGGCUGUAGGAUAUUACAUCAAUGAAACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAGAAAUCAGCCUGUC-- U A- -| A UAGAU
CCUAUG CCCAAC GUC AAAAUG CUGUGAUGUG \
GGAUGU GGGUUG CAG UUUUAC GACACUAUAC U
ACCAAAGUAACUACAUUAUA C AG U^ C UGAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Mature sequence |
Bge-Mir-2-P3_5p |
mirBase accession | None |
Sequence |
0- CAGUCAAAAUGACUGUGAUGUG -22
Get sequence
|
Co-mature sequence |
Bge-Mir-2-P3_3p |
mirBase accession | None |
Sequence |
35- UAUCACAGCCAUUUUUGACGAGUU -59
Get sequence
|