Mir-2-P3b

MirGeneDB ID

Dya-Mir-2-P3b

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-2b-2

Paralogues

Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Dya-Mir-2-P2a Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Dya-Mir-2-P3a Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Dya-Mir-2-P5 Dya-Mir-2-P6a Dya-Mir-2-P6b Dya-Mir-2-P6c Dya-Mir-2-P7 Dya-Mir-2-P8 Dya-Mir-2-P9-v1 Dya-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P3 Bge-Mir-2-P3 Cbr-Mir-2-o3 Cel-Mir-2-o3 Dan-Mir-2-P3b Dma-Mir-2-P3 Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3b Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2R: 6067230-6067298 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3b)

Mir-2-P4b-v1 2R: 6066569-6066628 [-] UCSC Ensembl
Mir-2-P4b-v2 2R: 6066569-6066628 [-] UCSC Ensembl
Mir-2-P4a-v1 2R: 6066959-6067024 [-] UCSC Ensembl
Mir-2-P4a-v2 2R: 6066959-6067024 [-] UCSC Ensembl
Mir-2-P3b 2R: 6067230-6067298 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAUCAAAUCGAAGCAAGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCCUUUUUCUGCCUAUUCAUAUCACAGCCAGCUUUGAGGAGCGACGCGAUGCUCAAGACAAAAAAAAUCGCAA

Get precursor sequence

Structure

        10          20        30        40         50        60   
UCAUCAAAUCGAAGCAA--   A        A          -|        A   UUUGCCUUU 
                   GAG AUUGUGUC UUCUUCAAAG UGGUUGUGA AUG         U
                   CUC UAGCGCAG GAGGAGUUUC ACCGACACU UAC         U
AACGCUAAAAAAAACAGAA   G        C          G^        A   UUAUCCGUC 
       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

He	Wh

Star sequence

Dya-Mir-2-P3b_5p*

mirBase accession

None

Sequence

0- UUCUUCAAAGUGGUUGUGAAAUG -23

Get sequence

Mature sequence

Dya-Mir-2-P3b_3p

mirBase accession

MIMAT0009075

Sequence

45- UAUCACAGCCAGCUUUGAGGAGCG -69

Get sequence