Mir-92-o71

MirGeneDB ID

Cin-Mir-92-o71

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-4038

Paralogues

Cin-Mir-92-o69 Cin-Mir-92-o70 Cin-Mir-92-o72 Cin-Mir-92-o73 Cin-Mir-92-o74 Cin-Mir-92-o75 Cin-Mir-92-o76 Cin-Mir-92-o77 Cin-Mir-92-o78

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

C. intestinalis

Node of Origin (family)

Bilateria

Genome context
(ci3)

1: 1926125-1926182 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o71)

Mir-92-o69 1: 1925379-1925436 [+] UCSC Ensembl
Mir-92-o70 1: 1925679-1925732 [+] UCSC Ensembl
Mir-92-o71 1: 1926125-1926182 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAACAAAUUCAAGUCUUGGUAAUUGGAAUCGGUCAAUACCAGAUGCAAAUCAAGUUCAAUGUUGCAUUGCACUGUUAUUGAUCUAGUUCCCAUUCAUCAAAUGUUCAACACACCAAU

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Structure

        10         20         30         40        50        
UAAACAAAUUCAAGUCU-    -   U     C-|       C   A     AU  AGUU 
                  UGGU AAU GGAAU  GGUCAAUA CAG UGCAA  CA    C
                  ACUA UUA CCUUG  CUAGUUAU GUC ACGUU  GU    A
UAACCACACAACUUGUAA    C   C     AU^       U   -     AC  UGUA 
      110       100        90        80         70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

Tissue expression

Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Ga	La	La

Star sequence

Cin-Mir-92-o71_5p*

mirBase accession

MIMAT0016565

Sequence

0- CGGUCAAUACCAGAUGCAAAUCA -23

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Mature sequence

Cin-Mir-92-o71_3p

mirBase accession

MIMAT0016566

Sequence

35- CAUUGCACUGUUAUUGAUCUAGU -58

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