MirGeneDB ID | Dmo-Mir-279-P1 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
dmo-mir-279
|
Paralogues |
Dmo-Mir-279-P2
Dmo-Mir-279-P3
|
Orthologues |
Aae-Mir-279-P1
Bpl-Mir-279
Cgi-Mir-279
Dan-Mir-279-P1
Dma-Mir-279-o1
Dme-Mir-279-P1
Dpu-Mir-279-o1
Dsi-Mir-279-P1
Dya-Mir-279-P1
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
Diptera
|
Node of Origin (family) |
Protostomia
|
Genome context (Dmoj_caf1) |
scaffold_6540: 26447152-26447218 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCUGAUCGGAAAUACGUACUACUGUUUUUAGUGAGUGAGGGUCCAGUGUUUCACAUUGUUUGCUUAAGUAUUUGUGACUAGAUCCACACUCAUUAAAAACGGUAGUUCAAUCUGCGUGAAAUAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUCUGAUCGGAAAUACGU--| A C UGUU UUGUUUGC
ACUACUGUUUUUAGUGAGUG GGGUC AG UCACA \
UGAUGGCAAAAAUUACUCAC CCUAG UC AGUGU U
UUUAUAAAGUGCGUCUAACU^ A A ---- UUAUGAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dmo-Mir-279-P1_5p* |
mirBase accession | None |
Sequence |
0- AGUGAGUGAGGGUCCAGUGUUUCACA -26
Get sequence
|
Mature sequence |
Dmo-Mir-279-P1_3p |
mirBase accession | MIMAT0008682 |
Sequence |
45- UGACUAGAUCCACACUCAUUAA -67
Get sequence
|