Mir-2-P6c

MirGeneDB ID

Dmo-Mir-2-P6c

Family name

MIR-2 (all species)

Seed

GAGAACG

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-6-3

Paralogues

Dmo-Mir-2-P1 Dmo-Mir-2-P2a Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dmo-Mir-2-P3b Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dmo-Mir-2-P5 Dmo-Mir-2-P6a Dmo-Mir-2-P6b Dmo-Mir-2-P7 Dmo-Mir-2-P8 Dmo-Mir-2-P9

Orthologues

Asu-Mir-2-o6 Dan-Mir-2-P6c Dme-Mir-2-P6c Dsi-Mir-2-P6c Dya-Mir-2-P6c

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Dmoj_caf1)

scaffold_6496: 20935964-20936029 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P6c)

Mir-2-P6c scaffold_6496: 20935964-20936029 [-] Ensembl
Mir-2-P6b scaffold_6496: 20936142-20936210 [-] Ensembl
Mir-2-P6a scaffold_6496: 20936318-20936375 [-] Ensembl
Mir-2-P5 scaffold_6496: 20936468-20936531 [-] Ensembl
Mir-9-P9 scaffold_6496: 20936638-20936694 [-] Ensembl
Mir-279-P2 scaffold_6496: 20936799-20936877 [-] Ensembl
Mir-3-P1 scaffold_6496: 20936995-20937055 [-] Ensembl
Mir-3-P2 scaffold_6496: 20937123-20937187 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CAAAUCGUGGCCGUAAAUUGCUUAAAGAGAAGAGAACGUUCGCUGUUGAUGUAGUCGAAUUCAUUUAAUCUUUAUAUCACAGUGGCUGUUCUUUUUUGUUUAACAAUUUUUCAACGUUGAGAAUGA

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Structure

        10           20        30        40        50        60   
CAAAUCGUGGCCGUAAA---|  C     G           UU      U      GUCGAAUUC 
                    UUG UUAAA AGAAGAGAACG  CGCUGU GAUGUA         \
                    AAC AAUUU UUUUUUCUUGU  GUGACA CUAUAU         A
AGUAAGAGUUGCAACUUUUU^  -     G           CG      -      UUCUAAUUU 
    120       110        100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Fe	Ma	Ma

Mature sequence

Dmo-Mir-2-P6c_5p

mirBase accession

None

Sequence

0- AGAGAACGUUCGCUGUUGAUGUA -23

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Star sequence

Dmo-Mir-2-P6c_3p*

mirBase accession

MIMAT0008635

Sequence

44- UAUCACAGUGGCUGUUCUUUUU -66

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