Mir-10-P1b-v2

MirGeneDB ID

Dno-Mir-10-P1b-v2

Family name

MIR-10 (all species)

Seed

CCCUGUA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-10b

Paralogues

Dno-Mir-10-P1b-v1 Dno-Mir-10-P1c-v1 Dno-Mir-10-P1c-v2 Dno-Mir-10-P2c Dno-Mir-10-P2d Dno-Mir-10-P3c Dno-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cgi-Mir-10-P1 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1b Lgi-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mal-Mir-10-P1b2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sko-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b1-v2 Tni-Mir-10-P1b2 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b3-v2 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1b4-v2 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(dasNov3)

JH575655: 3701010-3701069 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b-v2)

Mir-10-P1b-v1 JH575655: 3701009-3701070 [+] UCSC Ensembl
Mir-10-P1b-v2 JH575655: 3701010-3701069 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGGUUGUAACUGUAACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUAGUCACACAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCACGUUUCU

Get precursor sequence

Structure

        10          20        30        40        50          
GAGGUUGUAACUGUAAC--|   U        A    G     C          UGGUAGU 
                   GUUG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC       C
UCUUUGCACUUCAAAAACG^   U        A    -     A          UGACACA 
.       110       100        90         80        70

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

Tissue expression

To

Mature sequence

Dno-Mir-10-P1b-v2_5p

mirBase accession

MIMAT0047499

Sequence

0- ACCCUGUAGAACCGAAUUUGUG -22

Get sequence

Star sequence

Dno-Mir-10-P1b-v2_3p*

mirBase accession

MIMAT0047500

Sequence

39- CAGAUUCGAUUCUAGGGGAAU -60

Get sequence