Mir-124-P1-v2

MirGeneDB ID

Dno-Mir-124-P1-v2

Family name

MIR-124 (all species)

Seed

UAAGGCA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-124-1

Paralogues

Dno-Mir-124-P1-v1 Dno-Mir-124-P2-v1 Dno-Mir-124-P2-v2 Dno-Mir-124-P3-v1 Dno-Mir-124-P3-v2

Orthologues

Aae-Mir-124 Aca-Mir-124-P1-v1 Aca-Mir-124-P1-v2 Ami-Mir-124-P1-v1 Ami-Mir-124-P1-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bla-Mir-124 Bta-Mir-124-P1-v1 Bta-Mir-124-P1-v2 Cel-Mir-124 Cfa-Mir-124-P1-v1 Cfa-Mir-124-P1-v2 Cli-Mir-124-P1-v1 Cli-Mir-124-P1-v2 Cmi-Mir-124-P1-v1 Cmi-Mir-124-P1-v2 Cpi-Mir-124-P1-v1 Cpi-Mir-124-P1-v2 Cpo-Mir-124-P1-v1 Cpo-Mir-124-P1-v2 Cte-Mir-124 Dan-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dre-Mir-124-P1a-v1 Dre-Mir-124-P1a-v2 Dre-Mir-124-P1b-v1 Dre-Mir-124-P1b-v2 Dsi-Mir-124 Dya-Mir-124 Esc-Mir-124 Ete-Mir-124-P1-v1 Ete-Mir-124-P1-v2 Gga-Mir-124-P1-v1 Gga-Mir-124-P1-v2 Gja-Mir-124-P1-v1 Gja-Mir-124-P1-v2 Gmo-Mir-124-P1a-v1 Gmo-Mir-124-P1a-v2 Gmo-Mir-124-P1b-v1 Gmo-Mir-124-P1b-v2 Hme-Mir-124 Hsa-Mir-124-P1-v1 Hsa-Mir-124-P1-v2 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P1 Loc-Mir-124-P1-v1 Loc-Mir-124-P1-v2 Mal-Mir-124-P1a-v1 Mal-Mir-124-P1a-v2 Mal-Mir-124-P1b-v1 Mal-Mir-124-P1b-v2 Mdo-Mir-124-P1-v1 Mdo-Mir-124-P1-v2 Mml-Mir-124-P1-v1 Mml-Mir-124-P1-v2 Mmu-Mir-124-P1-v1 Mmu-Mir-124-P1-v2 Mun-Mir-124-P1-v1 Mun-Mir-124-P1-v2 Npo-Mir-124 Oan-Mir-124-P1-v1 Oan-Mir-124-P1-v2 Obi-Mir-124 Ocu-Mir-124-P1-v1 Ocu-Mir-124-P1-v2 Ovu-Mir-124 Pbv-Mir-124-P1-v1 Pbv-Mir-124-P1-v2 Pfl-Mir-124 Pma-Mir-124-o1 Pmi-Mir-124 Rno-Mir-124-P1-v1 Rno-Mir-124-P1-v2 Sha-Mir-124-P1-v1 Sha-Mir-124-P1-v2 Sko-Mir-124 Spt-Mir-124-P1 Spu-Mir-124 Sto-Mir-124-P1-v1 Sto-Mir-124-P1-v2 Tca-Mir-124 Tgu-Mir-124-P1-v1 Tgu-Mir-124-P1-v2 Tni-Mir-124-P1b-v1 Tni-Mir-124-P1b-v2 Xbo-Mir-124 Xla-Mir-124-P1c-v1 Xla-Mir-124-P1c-v2 Xla-Mir-124-P1d-v1 Xla-Mir-124-P1d-v2 Xtr-Mir-124-P1-v1 Xtr-Mir-124-P1-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(dasNov3)

JH569073: 2335337-2335394 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P1-v2)

Mir-124-P1-v1 JH569073: 2335337-2335395 [+] UCSC Ensembl
Mir-124-P1-v2 JH569073: 2335337-2335394 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUACGGAUCGAGAUGAAGACUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCCUAUGAGCUGCACUUGACGG

Get precursor sequence

Structure

        10         20        30        40        50         
CCUACGGAUCGAGAUGA-| A      C  CC        A   GA        UAAUG 
                  AG CUCUGC CU  GUGUUCAC GCG  CCUUGAUU     \
                  UC GAGGCG GA  CGUAAGUG CGC  GGAAUUAA     U
GGCAGUUCACGUCGAGUA^ C      A  AC        G   AC        CAUAC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dno-Mir-124-P1-v2_5p*

mirBase accession

MIMAT0047612

Sequence

0- CGUGUUCACAGCGGACCUUGAUU -23

Get sequence

Mature sequence

Dno-Mir-124-P1-v2_3p

mirBase accession

MIMAT0047613

Sequence

36- UUAAGGCACGCGGUGAAUGCCA -58

Get sequence