MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-301b
Paralogues Dno-Mir-130-P1c  Dno-Mir-130-P2b  Dno-Mir-130-P3b  Dno-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(dasNov3)
JH569570: 1030370-1030429 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P4a JH569570: 1030022-1030081 [-] UCSC Ensembl
Mir-130-P2a JH569570: 1030370-1030429 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUGGGGUACCCCCCUGCAGGCCGCAGGCGCUCUGACUAGAUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCCGGGGCCAGCCUUGGGGACCCCCCCUCCC
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Structure
        10          20        30         40           50        
CAGUGGGGUACCCCCCU--  A    GCA  C-   C    UAG---|       A  GUGCU 
                   GC GGCC   GG  GCU UGAC      AUUGCACU CU     \
                   CG CCGG   CC  CGA ACUG      UAACGUGA GA     C
CCCUCCCCCCCAGGGGUUC  A    GG-  UA   A    UUAUAG^       C  AGAGU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Star sequence

Dno-Mir-130-P2a_5p*

mirBase accessionMIMAT0047789
Sequence
0- GCUCUGACUAGAUUGCACUACU -22
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Mature sequence

Dno-Mir-130-P2a_3p

mirBase accessionMIMAT0047790
Sequence
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
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