Mir-30-P1b

MirGeneDB ID

Dno-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-30a

Paralogues

Dno-Mir-30-P1a Dno-Mir-30-P1d Dno-Mir-30-P2a Dno-Mir-30-P2b Dno-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dre-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(dasNov3)

JH582191: 2112177-2112239 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P2b JH582191: 2086952-2087013 [-] UCSC Ensembl
Mir-30-P1b JH582191: 2112177-2112239 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGGUGUAUUGCUGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCUGCAGAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGCCUCAGACUUCAAGGAGCUAC

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Structure

        10          20        30        40        50        60  
GAAGGUGUAUUGCUGUUGA--|    A   A            UC           GUGAAGC 
                     CAGUG GCG CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       U
CAUCGAGGAACUUCAGACUCC^    C   C            --           GUAGACG 
 120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Dno-Mir-30-P1b_5p

mirBase accession

MIMAT0047556

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

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Star sequence

Dno-Mir-30-P1b_3p*

mirBase accession

MIMAT0047557

Sequence

41- CUUUCAGUCGGAUGUUUGCAGC -63

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