MirGeneDB ID | Dya-Mir-2-P2b2 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
dya-mir-13b-2
|
Paralogues |
Dya-Mir-2-P1-v1
Dya-Mir-2-P1-v2
Dya-Mir-2-P2a
Dya-Mir-2-P2b1
Dya-Mir-2-P3a
Dya-Mir-2-P3b
Dya-Mir-2-P4a-v1
Dya-Mir-2-P4a-v2
Dya-Mir-2-P4b-v1
Dya-Mir-2-P4b-v2
Dya-Mir-2-P5
Dya-Mir-2-P6a
Dya-Mir-2-P6b
Dya-Mir-2-P6c
Dya-Mir-2-P7
Dya-Mir-2-P8
Dya-Mir-2-P9-v1
Dya-Mir-2-P9-v2
|
Orthologues |
Aae-Mir-2-P2
Bge-Mir-2-P2
Dan-Mir-2-P2b2
Dma-Mir-2-o2
Dma-Mir-2-P2
Dme-Mir-2-P2b2
Dmo-Mir-2-P2b2
Dpu-Mir-2-o2
Dpu-Mir-2-P2
Dsi-Mir-2-P2b2
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Protostomia
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
X: 12330569-12330629 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACUCGUCGCUUACCCCUGCUGUCUAGUAACGCGUCAAAAUGACUGUGAGCUAUGUGGAUUUGACUUCAUAUCACAGCCAUUUUGACGAGUUUGCUGGCCAGUCUCAUCAUCGUGAAAAGUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACUCGUCGCUUACCCCU-- U -| G A GC UGGAU
GCUG CUAGU AAC CGUCAAAAUG CUGUGA UAUG U
UGAC GGUCG UUG GCAGUUUUAC GACACU AUAC U
CUGAAAAGUGCUACUACUC C U^ A C -- UUCAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dya-Mir-2-P2b2_5p* |
mirBase accession | None |
Sequence |
0- GCGUCAAAAUGACUGUGAGCUAUG -24
Get sequence
|
Mature sequence |
Dya-Mir-2-P2b2_3p |
mirBase accession | MIMAT0009056 |
Sequence |
38- UAUCACAGCCAUUUUGACGAGUU -61
Get sequence
|