MirGeneDB 2.1
MirGeneDB ID

Dya-Mir-3-P2

Family name MIR-3 (all species)
Seed CACUGGG
Species Fruit fly (Drosophila yakuba)
MiRBase ID dya-mir-309
Paralogues Dya-Mir-3-P1  Dya-Mir-3-P3 
Orthologues Aae-Mir-3-P2a1  Aae-Mir-3-P2a2  Aae-Mir-3-P2b  Dan-Mir-3-P2  Dma-Mir-3  Dme-Mir-3-P2  Dmo-Mir-3-P2  Dpu-Mir-3  Dsi-Mir-3-P2 
Node of Origin (locus) Drosophila
Node of Origin (family) Pancrustacea
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)		 2R: 13623513-13623571 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P2)		 Mir-3-P2 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P1 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P2 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAAAGCAAAGUUUGGAACAGCAAUUAUACGACAAACCUUGUUCUGUUUUGCCAAUUUCCUAGCCAGCACUGGGUAAAGUUUGUCCUAUAAUCCCGAAACGACGACCAGCAGCCAAGU
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Structure
        10        20          30        40        50         
AUCAAAGCAAAGUUUGGAACAGCA--|     C       C   UU U  U   CCAAUU 
                          AUUAUA GACAAAC UUG  C GU UUG      \
                          UAAUAU CUGUUUG AAU  G CA GAC      U
UGAACCGACGACCAGCAGCAAAGCCC^     C       A   GG U  C   CGAUCC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
He Wh
Star sequence

Dya-Mir-3-P2_5p*
mirBase accessionNone
Sequence 
0- CGACAAACCUUGUUCUGUUUUG -22
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Mature sequence

Dya-Mir-3-P2_3p
mirBase accessionMIMAT0009085
Sequence 
37- GCACUGGGUAAAGUUUGUCCUA -59
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