MirGeneDB 2.1

MirGeneDB ID

Dya-Mir-960

Family name MIR-960 (all species)
Seed GAGUAUU
Species Fruit fly (Drosophila yakuba)
MiRBase ID
Paralogues
Orthologues Dan-Mir-960  Dme-Mir-960  Dmo-Mir-960  Dsi-Mir-960 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)
2L: 13552167-13552226 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCUUCGCCCGCGUGUUUUGUACCAGAUUCUGAGUAUUCCUGAUUGCAUAGCUUUGGCCUUUGAUUGCUAUACGGUCUGGGACACUUUUAACGUGGUAUCAAAUCUGAUUCAACCGAAGG
Get precursor sequence
Structure
        10         20         30        40        50         
CGCUUCGCCCGCGUGUU-   -|    GA  CU    A    U     C     UUUGGC 
                  UUG UACCA  UU  GAGU UUCC GAUUG AUAGC      C
                  AAC AUGGU  AA  UUCA AGGG CUGGC UAUCG      U
GGAAGCCAACUUAGUCUA   U^    GC  UU    C    U     A     UUAGUU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -2 on the 3p arm, and -1 on the 5p arm,.
3' NTU No
MotifsNo
Tissue expression
 +
He Wh
Mature sequence

Dya-Mir-960_5p

mirBase accessionNone
Sequence
0- UGAGUAUUCCUGAUUGCAUAGC -22
Get sequence
Star sequence

Dya-Mir-960_3p*

mirBase accessionNone
Sequence
38- UAUACGGUCUGGGACACUUUUA -60
Get sequence