MirGeneDB ID | Dya-Mir-960 |
Family name |
MIR-960 (all species) |
Seed |
GAGUAUU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Dan-Mir-960
Dme-Mir-960
Dmo-Mir-960
Dsi-Mir-960
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
2L: 13552167-13552226 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGCUUCGCCCGCGUGUUUUGUACCAGAUUCUGAGUAUUCCUGAUUGCAUAGCUUUGGCCUUUGAUUGCUAUACGGUCUGGGACACUUUUAACGUGGUAUCAAAUCUGAUUCAACCGAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCUUCGCCCGCGUGUU- -| GA CU A U C UUUGGC
UUG UACCA UU GAGU UUCC GAUUG AUAGC C
AAC AUGGU AA UUCA AGGG CUGGC UAUCG U
GGAAGCCAACUUAGUCUA U^ GC UU C U A UUAGUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -2 on the 3p arm, and -1 on the 5p arm,. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Dya-Mir-960_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUCCUGAUUGCAUAGC -22
Get sequence
|
Star sequence |
Dya-Mir-960_3p* |
mirBase accession | None |
Sequence |
38- UAUACGGUCUGGGACACUUUUA -60
Get sequence
|