MirGeneDB ID | Dya-Mir-963 |
Family name |
MIR-963 (all species) |
Seed |
CAUCUGU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dan-Mir-963
Dme-Mir-963-v1
Dme-Mir-963-v2
Dmo-Mir-963-v1
Dmo-Mir-963-v2
Dsi-Mir-963
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
2L: 13551212-13551277 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACUACUGCAUUGUUCUUGGUCUAAUCUAAAACAAGGUACAUAUCAGGUUGUUUCCUAUAUUGGAUGAUCGAAACAUCUGUAUAUACCUUUGUUCCGAAUGGACGAAAGAGCAUCUUCAAGUUAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CACUACUGCAUUGUUCUUG---| A UAA - C U U CCUAUAUU
GUCUA UC AACAA GGUA AUA CAGGU GUUU \
CAGGU AG UUGUU CCAU UAU GUCUA CAAA G
AUAUUGAACUUCUACGAGAAAG^ A CC- U A - - GCUAGUAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dya-Mir-963_5p* |
mirBase accession | None |
Sequence |
0- AACAAGGUACAUAUCAGGUUGUUU -24
Get sequence
|
Mature sequence |
Dya-Mir-963_3p |
mirBase accession | None |
Sequence |
43- ACAUCUGUAUAUACCUUUGUUCC -66
Get sequence
|