MirGeneDB ID | Ete-Mir-17-P1d |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-17-P1a
Ete-Mir-17-P1c
Ete-Mir-17-P2a
Ete-Mir-17-P2c
Ete-Mir-17-P4a
Ete-Mir-17-P4c
Ete-Mir-17-P4d
|
Orthologues |
Ami-Mir-17-P1d
Bta-Mir-17-P1d
Cfa-Mir-17-P1d
Cmi-Mir-17-P1d
Cpi-Mir-17-P1d
Cpo-Mir-17-P1d
Dno-Mir-17-P1d
Gmo-Mir-17-P1d
Hsa-Mir-17-P1d
Lch-Mir-17-P1d
Loc-Mir-17-P1d
Mal-Mir-17-P1d
Mml-Mir-17-P1d
Mmu-Mir-17-P1d
Ocu-Mir-17-P1d
Rno-Mir-17-P1d
Sto-Mir-17-P1d
Tni-Mir-17-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980314: 10057777-10057838 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCCUCCCUCCCACUCAGGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCGGUAGGGCAUGCACCGCAGCCAGGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCCUCCCUCCCACUCAG-- UA-| G AGAUAGUGGUCC
GCCCUGCCGGGGC AAGUGCU ACAGUGC \
CGGGAUGGCCUCG UUCAUGG UGUCACG U
GAGGGACCGACGCCACGUA UCG^ G CCAUCGUGCCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts +1 and +2. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ete-Mir-17-P1d_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUGACAGUGCAGAUA -22
Get sequence
|
Star sequence |
Ete-Mir-17-P1d_3p* |
mirBase accession | None |
Sequence |
40- CCGCACUGUGGGUACUUGCUGC -62
Get sequence
|