MirGeneDB ID | Ete-Mir-27-P2 |
Family name |
MIR-27 (all species) |
Seed |
UCACAGU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-27-P3
|
Orthologues |
Aca-Mir-27-P2
Ami-Mir-27-P2
Bta-Mir-27-P2
Cfa-Mir-27-P2
Cli-Mir-27-P2
Cmi-Mir-27-P2
Cpi-Mir-27-P2
Cpo-Mir-27-P2
Dno-Mir-27-P2
Dre-Mir-27-P2a
Dre-Mir-27-P2b
Gga-Mir-27-P2
Gja-Mir-27-P2
Gmo-Mir-27-P2b
Hsa-Mir-27-P2
Lch-Mir-27-P2
Loc-Mir-27-P2
Mal-Mir-27-P2a
Mal-Mir-27-P2b
Mdo-Mir-27-P2
Mml-Mir-27-P2
Mmu-Mir-27-P2
Mun-Mir-27-P2
Oan-Mir-27-P2
Ocu-Mir-27-P2
Pbv-Mir-27-P2
Pma-Mir-27-o2
Rno-Mir-27-P2
Sha-Mir-27-P2
Spt-Mir-27-P2
Sto-Mir-27-P2
Tgu-Mir-27-P2
Tni-Mir-27-P2b
Xla-Mir-27-P2c
Xla-Mir-27-P2d
Xtr-Mir-27-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980384: 3445414-3445476 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCCAGACCGGUGACCUCUCUGACAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAAGGUGAGAUGGGGACGGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCAGACCGGUGACCUC----| GACA AUUG GUGAUUGG
UCU AGGUGCAGAGCUUAGCUG GUGAACA \
AGA UCCACGUCUUGAAUCGGU CACUUGU U
UUGGCAGGGGUAGAGUGGAAG^ AG-- GA-- UUCGCCUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Ete-Mir-27-P2_5p* |
mirBase accession | None |
Sequence |
0- AGAGCUUAGCUGAUUGGUGAACA -23
Get sequence
|
Mature sequence |
Ete-Mir-27-P2_3p |
mirBase accession | None |
Sequence |
42- UUCACAGUGGCUAAGUUCUGC -63
Get sequence
|