Mir-124-P3-v2

MirGeneDB ID

Mmu-Mir-124-P3-v2

Family name

MIR-124 (all species)

Seed

UAAGGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-124-3

Paralogues

Mmu-Mir-124-P1-v1 Mmu-Mir-124-P1-v2 Mmu-Mir-124-P2-v1 Mmu-Mir-124-P2-v2 Mmu-Mir-124-P3-v1

Orthologues

Aae-Mir-124 Aca-Mir-124-P3-v1 Aca-Mir-124-P3-v2 Ami-Mir-124-P3-v1 Ami-Mir-124-P3-v2 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bla-Mir-124 Bta-Mir-124-P3-v1 Bta-Mir-124-P3-v2 Cel-Mir-124 Cfa-Mir-124-P3-v1 Cfa-Mir-124-P3-v2 Cli-Mir-124-P3-v1 Cli-Mir-124-P3-v2 Cmi-Mir-124-P3-v1 Cmi-Mir-124-P3-v2 Cpi-Mir-124-P3-v1 Cpi-Mir-124-P3-v2 Cpo-Mir-124-P3-v1 Cpo-Mir-124-P3-v2 Cte-Mir-124 Dan-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dno-Mir-124-P3-v1 Dno-Mir-124-P3-v2 Dpu-Mir-124 Dre-Mir-124-P3a-v1 Dre-Mir-124-P3a-v2 Dre-Mir-124-P3b-v1 Dre-Mir-124-P3b-v2 Dsi-Mir-124 Dya-Mir-124 Esc-Mir-124 Gga-Mir-124-P3-v1 Gga-Mir-124-P3-v2 Gja-Mir-124-P3-v1 Gja-Mir-124-P3-v2 Gmo-Mir-124-P3a-v1 Gmo-Mir-124-P3a-v2 Gmo-Mir-124-P3b-v1 Gmo-Mir-124-P3b-v2 Hme-Mir-124 Hsa-Mir-124-P3-v1 Hsa-Mir-124-P3-v2 Isc-Mir-124 Lan-Mir-124 Lch-Mir-124-P3 Loc-Mir-124-P3-v1 Loc-Mir-124-P3-v2 Mal-Mir-124-P3a-v1 Mal-Mir-124-P3a-v2 Mal-Mir-124-P3b-v1 Mal-Mir-124-P3b-v2 Mdo-Mir-124-P3-v1 Mdo-Mir-124-P3-v2 Mml-Mir-124-P3-v1 Mml-Mir-124-P3-v2 Mun-Mir-124-P3-v1 Mun-Mir-124-P3-v2 Npo-Mir-124 Oan-Mir-124-P3-v1 Oan-Mir-124-P3-v2 Obi-Mir-124 Ocu-Mir-124-P3-v1 Ocu-Mir-124-P3-v2 Ovu-Mir-124 Pbv-Mir-124-P3-v1 Pbv-Mir-124-P3-v2 Pfl-Mir-124 Pma-Mir-124-o3 Pmi-Mir-124 Rno-Mir-124-P3-v1 Rno-Mir-124-P3-v2 Sha-Mir-124-P3-v1 Sha-Mir-124-P3-v2 Sko-Mir-124 Spt-Mir-124-P3e Spt-Mir-124-P3f Spu-Mir-124 Sto-Mir-124-P3-v1 Sto-Mir-124-P3-v2 Tca-Mir-124 Tgu-Mir-124-P3-v1 Tgu-Mir-124-P3-v2 Xbo-Mir-124 Xla-Mir-124-P3c-v1 Xla-Mir-124-P3c-v2 Xla-Mir-124-P3d-v1 Xla-Mir-124-P3d-v2 Xtr-Mir-124-P3-v1 Xtr-Mir-124-P3-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr2: 180894045-180894103 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-124-P3-v2)

Mir-124-P3-v1 chr2: 180894045-180894104 [+] UCSC Ensembl
Mir-124-P3-v2 chr2: 180894045-180894103 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCCCGCCGCAGCCCUGAGGGCCCCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGCGCCUCCGCCGCUCCUUUCUCAU

Get precursor sequence

Structure

        10        20          30        40        50         
CCGCCCGCCGCAGCCCUG   -   C   -| C        A   GA        UAAUG 
                  AGG GCC CUC UG GUGUUCAC GCG  CCUUGAUU     U
                  UCC CGG GAG AC CGUAAGUG CGC  GGAAUUAA     C
UACUCUUUCCUCGCCGCC   G   A   A^ -        G   AC        CAUAU 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-124-P3-v2_5p*

mirBase accession

MIMAT0004527

Sequence

0- CGUGUUCACAGCGGACCUUGAUU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004527
TargetScanVert: mmu-miR-124-5p
miRDB: MIMAT0004527

Mature sequence

Mmu-Mir-124-P3-v2_3p

mirBase accession

MIMAT0000134

Sequence

37- UUAAGGCACGCGGUGAAUGCCA -59

Get sequence

Proposed targets

microrna.org: MIMAT0000134
TargetScanVert: mmu-miR-124-3p.1
miRDB: MIMAT0000134