Mir-133-P1-v2

MirGeneDB ID

Mmu-Mir-133-P1-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-133a-1

Paralogues

Mmu-Mir-133-P1-v1 Mmu-Mir-133-P2-v1 Mmu-Mir-133-P2-v2 Mmu-Mir-133-P3-v1 Mmu-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P1-v1 Aca-Mir-133-P1-v2 Ami-Mir-133-P1-v1 Ami-Mir-133-P1-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P1-v1 Bta-Mir-133-P1-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P1-v1 Cfa-Mir-133-P1-v2 Cgi-Mir-133 Cin-Mir-133 Cli-Mir-133-P1-v1 Cli-Mir-133-P1-v2 Cmi-Mir-133-P1-v1 Cmi-Mir-133-P1-v2 Cpi-Mir-133-P1-v1 Cpi-Mir-133-P1-v2 Cpo-Mir-133-P1-v1 Cpo-Mir-133-P1-v2 Cte-Mir-133 Dan-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P1-v1 Dno-Mir-133-P1-v2 Dpu-Mir-133 Dre-Mir-133-P1-v1 Dre-Mir-133-P1-v2 Dsi-Mir-133 Dya-Mir-133 Efe-Mir-133 Esc-Mir-133 Ete-Mir-133-P1-v1 Ete-Mir-133-P1-v2 Gga-Mir-133-P1-v1 Gga-Mir-133-P1-v2 Gja-Mir-133-P1-v1 Gja-Mir-133-P1-v2 Gmo-Mir-133-P1-v1 Gmo-Mir-133-P1-v2 Hme-Mir-133 Hsa-Mir-133-P1-v1 Hsa-Mir-133-P1-v2 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P1 Lgi-Mir-133 Loc-Mir-133-P1-v1 Loc-Mir-133-P1-v2 Mal-Mir-133-P1-v1 Mal-Mir-133-P1-v2 Mdo-Mir-133-P1-v1 Mdo-Mir-133-P1-v2 Mml-Mir-133-P1-v1 Mml-Mir-133-P1-v2 Mun-Mir-133-P1-v1 Mun-Mir-133-P1-v2 Oan-Mir-133-P1-v1 Oan-Mir-133-P1-v2 Obi-Mir-133 Ocu-Mir-133-P1-v1 Ocu-Mir-133-P1-v2 Ovu-Mir-133 Pbv-Mir-133-P1-v1 Pbv-Mir-133-P1-v2 Pma-Mir-133-o1-v1 Pma-Mir-133-o1-v2 Rno-Mir-133-P1-v1 Rno-Mir-133-P1-v2 Sha-Mir-133-P1-v1 Sha-Mir-133-P1-v2 Spt-Mir-133-P1 Spu-Mir-133 Sto-Mir-133-P1-v1 Sto-Mir-133-P1-v2 Tca-Mir-133 Tgu-Mir-133-P1-v1 Tgu-Mir-133-P1-v2 Tni-Mir-133-P1-v1 Tni-Mir-133-P1-v2 Xbo-Mir-133 Xla-Mir-133-P1a-v1 Xla-Mir-133-P1a-v2 Xla-Mir-133-P1b-v1 Xla-Mir-133-P1b-v2 Xtr-Mir-133-P1-v1 Xtr-Mir-133-P1-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr18: 10782912-10782971 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P1-v2)

Mir-133-P1-v1 chr18: 10782912-10782971 [-] UCSC Ensembl
Mir-133-P1-v2 chr18: 10782912-10782971 [-] UCSC Ensembl
Mir-1-P1 chr18: 10785485-10785545 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUACACCAGCAGCGGCAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAUUACACAUGGACAGCCA

Get precursor sequence

Structure

        10          20        30        40        50         
CCUACACCAGCAGCGGC--|    UUU    A       AA  U  A       CGCCUC 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUA      U
ACCGACAGGUACACAUUAG^    UAU    G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-133-P1-v2_5p*

mirBase accession

MIMAT0003473

Sequence

0- AGCUGGUAAAAUGGAACCAAAU -22

Get sequence

Proposed targets

microrna.org: MIMAT0003473
TargetScanVert: mmu-miR-133a-5p
miRDB: MIMAT0003473

Mature sequence

Mmu-Mir-133-P1-v2_3p

mirBase accession

MIMAT0000145

Sequence

38- UUGGUCCCCUUCAACCAGCUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000145
TargetScanVert: mmu-miR-133a-3p.2
miRDB: MIMAT0000145