Mir-133-P3-v1

MirGeneDB ID

Mmu-Mir-133-P3-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-133a-2

Paralogues

Mmu-Mir-133-P1-v1 Mmu-Mir-133-P1-v2 Mmu-Mir-133-P2-v1 Mmu-Mir-133-P2-v2 Mmu-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P3-v1 Aca-Mir-133-P3-v2 Ami-Mir-133-P3-v1 Ami-Mir-133-P3-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P3-v1 Bta-Mir-133-P3-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P3-v1 Cfa-Mir-133-P3-v2 Cgi-Mir-133 Cin-Mir-133 Cli-Mir-133-P3-v1 Cli-Mir-133-P3-v2 Cmi-Mir-133-P3-v1 Cmi-Mir-133-P3-v2 Cpi-Mir-133-P3-v1 Cpi-Mir-133-P3-v2 Cpo-Mir-133-P3-v1 Cpo-Mir-133-P3-v2 Cte-Mir-133 Dan-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P3-v1 Dno-Mir-133-P3-v2 Dpu-Mir-133 Dre-Mir-133-P3-v1 Dre-Mir-133-P3-v2 Dsi-Mir-133 Dya-Mir-133 Efe-Mir-133 Esc-Mir-133 Ete-Mir-133-P3-v1 Ete-Mir-133-P3-v2 Gga-Mir-133-P3-v1 Gga-Mir-133-P3-v2 Gja-Mir-133-P3-v1 Gja-Mir-133-P3-v2 Gmo-Mir-133-P3-v1 Gmo-Mir-133-P3-v2 Hme-Mir-133 Hsa-Mir-133-P3-v1 Hsa-Mir-133-P3-v2 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P3 Lgi-Mir-133 Loc-Mir-133-P3-v1 Loc-Mir-133-P3-v2 Mal-Mir-133-P3-v1 Mal-Mir-133-P3-v2 Mdo-Mir-133-P3-v1 Mdo-Mir-133-P3-v2 Mml-Mir-133-P3-v1 Mml-Mir-133-P3-v2 Mun-Mir-133-P3-v1 Mun-Mir-133-P3-v2 Oan-Mir-133-P3-v1 Oan-Mir-133-P3-v2 Obi-Mir-133 Ovu-Mir-133 Pbv-Mir-133-P3-v1 Pbv-Mir-133-P3-v2 Pma-Mir-133-o3-v1 Pma-Mir-133-o3-v2 Rno-Mir-133-P3-v1 Rno-Mir-133-P3-v2 Sha-Mir-133-P3-v1 Sha-Mir-133-P3-v2 Spt-Mir-133-P3 Spu-Mir-133 Sto-Mir-133-P3-v1 Sto-Mir-133-P3-v2 Tca-Mir-133 Tgu-Mir-133-P3-v1 Tgu-Mir-133-P3-v2 Xbo-Mir-133 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3a-v2 Xla-Mir-133-P3b-v1 Xla-Mir-133-P3b-v2 Xtr-Mir-133-P3-v1 Xtr-Mir-133-P3-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr2: 180398400-180398459 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P3-v1)

Mir-1-P3 chr2: 180389057-180389117 [+] UCSC Ensembl
Mir-133-P3-v1 chr2: 180398400-180398459 [+] UCSC Ensembl
Mir-133-P3-v2 chr2: 180398400-180398459 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGUGGAUCAGAAGCCAAAUGCUUUGCUGAAGCUGGUAAAAUGGAACCAAAUCAGCUGUUGGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAUCACGCCGCAUGGCCCA

Get precursor sequence

Structure

        10          20        30        40        50         
CAGUGGAUCAGAAGCCA--|    UUU    A       AA  U  A        AGCUG 
                   AAUGC   GCUG AGCUGGU  AA GG ACCAAAUC     U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUAG     U
ACCCGGUACGCCGCACUAG^    CGU    G       AC  C  C        GUAGG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-133-P3-v1_5p*

mirBase accession

MIMAT0003473

Sequence

0- AGCUGGUAAAAUGGAACCAAAUC -23

Get sequence

Proposed targets

microrna.org: MIMAT0003473
TargetScanVert: mmu-miR-133a-5p
miRDB: MIMAT0003473

Mature sequence

Mmu-Mir-133-P3-v1_3p

mirBase accession

MIMAT0000145

Sequence

37- UUUGGUCCCCUUCAACCAGCUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000145
TargetScanVert: mmu-miR-133a-3p.2
miRDB: MIMAT0000145