MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-15-P1c-v3

Family name MIR-15 (all species)
Seed AACAUGA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-322
Paralogues Mmu-Mir-15-P1a  Mmu-Mir-15-P1b  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1d  Mmu-Mir-15-P2a  Mmu-Mir-15-P2b  Mmu-Mir-15-P2c  Mmu-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mun-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(mm10)
chrX: 53054268-53054329 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c-v3)
Mir-450-P3 chrX: 53048008-53048065 [-] UCSC Ensembl
Mir-450-P2 chrX: 53048171-53048227 [-] UCSC Ensembl
Mir-450-P1 chrX: 53048304-53048360 [-] UCSC Ensembl
Mir-542 chrX: 53049414-53049474 [-] UCSC Ensembl
Mir-351 chrX: 53053276-53053338 [-] UCSC Ensembl
Mir-15-P2c chrX: 53053987-53054049 [-] UCSC Ensembl
Mir-15-P1c-v3 chrX: 53054268-53054329 [-] UCSC Ensembl
Mir-15-P1c-v2 chrX: 53054269-53054328 [-] UCSC Ensembl
Mir-15-P1c-v1 chrX: 53054270-53054327 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCCCCCACCCUCGUUGACUCCGAAGGGCUGCAGCAGCAAUUCAUGUUUUGGAGUAUUGCCAAGGUUCAAAACAUGAAGCGCUGCAACACCCCUUCGUGGGGAAUGUAGAAGGUGGGGACC
Get precursor sequence
Structure
        10         20         30        40        50        60
CGGCCCCCACCCUCGUUGA-   -|      C  CA     AA           GAGUAUU 
                    CUC CGAAGGG UG  GCAGC  UUCAUGUUUUG       G
                    GGG GCUUCCC AC  CGUCG  AAGUACAAAAC       C
CCAGGGGUGGAAGAUGUAAG   U^      C  AA     CG           UUGGAAC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-15-P1c-v3_5p*

mirBase accessionMIMAT0000548
Sequence
0- UGCAGCAGCAAUUCAUGUUUUG -22
Get sequence
Proposed targets microrna.org: MIMAT0000548
TargetScanVert: mmu-miR-322-5p
miRDB: MIMAT0000548
Mature sequence

Mmu-Mir-15-P1c-v3_3p

mirBase accessionMIMAT0000549
Sequence
40- AAACAUGAAGCGCUGCAACACC -62
Get sequence
Proposed targets microrna.org: MIMAT0000549
TargetScanVert: mmu-miR-322-3p
miRDB: MIMAT0000549