MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-542

Family name MIR-542 (all species)
Seed GUGACAG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-542
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cfa-Mir-542-v2  Cpo-Mir-542  Dno-Mir-542-v1  Dno-Mir-542-v2  Ete-Mir-542  Hsa-Mir-542-v1  Hsa-Mir-542-v2  Mml-Mir-542-v1  Mml-Mir-542-v2  Ocu-Mir-542-v1  Ocu-Mir-542-v2  Rno-Mir-542-P1a  Rno-Mir-542-P1b  Rno-Mir-542-P1c 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)		 chrX: 53049414-53049474 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542)		 Mir-450-P3 chrX: 53048008-53048065 [-] UCSC Ensembl
Mir-450-P2 chrX: 53048171-53048227 [-] UCSC Ensembl
Mir-450-P1 chrX: 53048304-53048360 [-] UCSC Ensembl
Mir-542 chrX: 53049414-53049474 [-] UCSC Ensembl
Mir-351 chrX: 53053276-53053338 [-] UCSC Ensembl
Mir-15-P2c chrX: 53053987-53054049 [-] UCSC Ensembl
Mir-15-P1c-v3 chrX: 53054268-53054329 [-] UCSC Ensembl
Mir-15-P1c-v2 chrX: 53054269-53054328 [-] UCSC Ensembl
Mir-15-P1c-v1 chrX: 53054270-53054327 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGGUUACACAUGCAGGGAUCUCAGACGUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCCCUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCCUCUUCCUAAGAAUU
Get precursor sequence
Structure
        10          20        30        40        50          
UGAGGUUACACAUGCAG--| A        GUC    GG    UCA         AUACCA 
                   GG UCUCAGAC   UCGG  AUCA   UGUCACGAG      \
                   CC AGGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UUAAGAAUCCUUCUCCUCA^ G        GAA    AA    UAG         CCGUGU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut in murids is -1 and they do not express the second variant at relatively high levels relative to the other mammals.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-542_5p*
mirBase accessionMIMAT0003171
Sequence 
0- CUCGGGGAUCAUCAUGUCACGAG -23
Get sequence
Proposed targets microrna.org: MIMAT0003171
TargetScanVert: mmu-miR-542-5p
miRDB: MIMAT0003171
Mature sequence

Mmu-Mir-542_3p
mirBase accessionMIMAT0003172
Sequence 
38- UGUGACAGAUUGAUAACUGAAAG -61
Get sequence
Proposed targets microrna.org: MIMAT0003172
TargetScanVert: mmu-miR-542-3p
miRDB: MIMAT0003172