Mir-29-P1d-v1

MirGeneDB ID

Mmu-Mir-29-P1d-v1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-29b-2

Paralogues

Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Mmu-Mir-29-P1d-v2 Mmu-Mir-29-P2b Mmu-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aca-Mir-29-P1d-v2 Ami-Mir-29-P1d-v1 Ami-Mir-29-P1d-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d7-v2 Bta-Mir-29-P1d8-v1 Bta-Mir-29-P1d8-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cfa-Mir-29-P1d-v2 Cgi-Mir-29-P1 Cli-Mir-29-P1d-v1 Cli-Mir-29-P1d-v2 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P1d-v2 Cpo-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v2 Cte-Mir-29-P1 Dan-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dno-Mir-29-P1d-v2 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Ete-Mir-29-P1d-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P1d-v2 Gja-Mir-29-P1d-v1 Gja-Mir-29-P1d-v2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Hme-Mir-29-P1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P1d-v2 Lch-Mir-29-P1d Loc-Mir-29-P1d Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P1d2-v2 Mdo-Mir-29-P1d-v1 Mdo-Mir-29-P1d-v2 Mml-Mir-29-P1d-v1 Mml-Mir-29-P1d-v2 Mun-Mir-29-P1d-v1 Mun-Mir-29-P1d-v2 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Oan-Mir-29-P1d-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ocu-Mir-29-P1d-v2 Ovu-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pbv-Mir-29-P1d-v2 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d5-v2 Rno-Mir-29-P1d6-v1 Rno-Mir-29-P1d6-v2 Sha-Mir-29-P1d-v1 Sha-Mir-29-P1d-v2 Sko-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P1d-v2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Xbo-Mir-29-P1 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xtr-Mir-29-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr1: 195037049-195037113 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1d-v1)

Mir-29-P1d-v1 chr1: 195037049-195037113 [+] UCSC Ensembl
Mir-29-P1d-v2 chr1: 195037050-195037112 [+] UCSC Ensembl
Mir-29-P2d chr1: 195037564-195037621 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCUUCAGUGAGAUCCUCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAGUAAGAAUUGCAGCACAGCAGAGG

Get precursor sequence

Structure

        10         20         30         40        50        60  
UUUCUUCAGUGAGAUCC-    -         -|         C      G  U   UUUUUCC 
                  UCUU CUUCUGGAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GAGGAUUUU UGACUAAAGU UACCAC GA UCU       U
GGAGACGACACGACGUUA    U         G^         U      -  -   AUGUUUC 
   120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-29-P1d-v1_5p*

mirBase accession

MIMAT0017063

Sequence

0- GCUGGUUUCACAUGGUGGCUUAGA -24

Get sequence

Proposed targets

TargetScanVert: mmu-miR-29b-2-5p
miRDB: MIMAT0017063

Mature sequence

Mmu-Mir-29-P1d-v1_3p

mirBase accession

MIMAT0000127

Sequence

42- UAGCACCAUUUGAAAUCAGUGUU -65

Get sequence

Proposed targets

microrna.org: MIMAT0000127
TargetScanVert: mmu-miR-29b-3p
miRDB: MIMAT0000127