MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-30b
Paralogues Mmu-Mir-30-P1a  Mmu-Mir-30-P1b  Mmu-Mir-30-P1d  Mmu-Mir-30-P2b  Mmu-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr15: 68337431-68337490 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P2a chr15: 68337431-68337490 [-] UCSC Ensembl
Mir-30-P1a chr15: 68341217-68341278 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCUCUCUCUAAGCCAAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUCAUACAUGCGUUGGCUGGGAUGUGGAUGUUUACGUCAGCUGUCUUGGAGUAUCCACCAGUUAACAU
Get precursor sequence
Structure
        10            20        30        40         50         
AAGUCUCUCUCUAAGCC----|  UUU     C            U   -       GUCAUA 
                     AAG   CAGUU AUGUAAACAUCC ACA CUCAGCU      C
                     UUC   GUCGA UGCAUUUGUAGG UGU GGGUCGG      A
UACAAUUGACCACCUAUGAGG^  U--     C            -   A       UUGCGU 
.       110       100          90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-30-P2a_5p

mirBase accessionMIMAT0000130
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
Proposed targets microrna.org: MIMAT0000130
TargetScanVert: mmu-miR-30b-5p
miRDB: MIMAT0000130
Star sequence

Mmu-Mir-30-P2a_3p*

mirBase accessionMIMAT0004524
Sequence
38- CUGGGAUGUGGAUGUUUACGUC -60
Get sequence
Proposed targets microrna.org: MIMAT0004524
TargetScanVert: mmu-miR-30b-3p
miRDB: MIMAT0004524