MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-506-P16

Family name MIR-506 (all species)
Seed UCUUGGA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-470
Paralogues Mmu-Mir-506-P1  Mmu-Mir-506-P2  Mmu-Mir-506-P7  Mmu-Mir-506-P14  Mmu-Mir-506-P15a  Mmu-Mir-506-P15b1  Mmu-Mir-506-P15b2  Mmu-Mir-506-P15c1  Mmu-Mir-506-P15c2  Mmu-Mir-506-P15d  Mmu-Mir-506-P17  Mmu-Mir-506-P18  Mmu-Mir-506-P19  Mmu-Mir-506-P20  Mmu-Mir-506-P21  Mmu-Mir-506-P22  Mmu-Mir-506-P23  Mmu-Mir-506-P24  Mmu-Mir-506-P25  Mmu-Mir-506-P26  Mmu-Mir-506-P27 
Orthologues
Node of Origin (locus) M. musculus
Node of Origin (family) Eutheria
Genome context
(mm10)
chrX: 66813961-66814017 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P16)
Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P15c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P15b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P15a chrX: 66839063-66839121 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUAUAUUGAAGCUGUGGUGUGCAGUGCUCUUCUUGGACUGGCACUGGUGAGUUAAACUAAAUACAACCAGUACCUUUCUGAGAAGAGUAAAGCUCAUCACAUUCUUUUGAUGAGGC
Get precursor sequence
Structure
        10          20        30        40        50        
UCUAUAUUGAAGCUGUG--|  U  AG         UG  CU  C      GA  UAAA 
                   GUG GC  UGCUCUUCU  GA  GG ACUGGU  GU    C
                   UAC CG  AUGAGAAGA  CU  CC UGACCA  CA    U
CGGAGUAGUUUUCUUACAC^  U  AA         GU  UU  A      A-  UAAA 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-506-P16_5p

mirBase accessionMIMAT0002111
Sequence
0- UUCUUGGACUGGCACUGGUGAGU -23
Get sequence
Proposed targets microrna.org: MIMAT0002111
TargetScanVert: mmu-miR-470-5p
miRDB: MIMAT0002111
Star sequence

Mmu-Mir-506-P16_3p*

mirBase accessionMIMAT0004760
Sequence
35- AACCAGUACCUUUCUGAGAAGA -57
Get sequence
Proposed targets microrna.org: MIMAT0004760
TargetScanVert: mmu-miR-470-3p
miRDB: MIMAT0004760