Mir-506-P20

MirGeneDB ID

Mmu-Mir-506-P20

Family name

MIR-506 (all species)

Seed

AAGACAC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-743a

Paralogues

Mmu-Mir-506-P1 Mmu-Mir-506-P2 Mmu-Mir-506-P7 Mmu-Mir-506-P14 Mmu-Mir-506-P15a Mmu-Mir-506-P15b1 Mmu-Mir-506-P15b2 Mmu-Mir-506-P15c1 Mmu-Mir-506-P15c2 Mmu-Mir-506-P15d Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24 Mmu-Mir-506-P25 Mmu-Mir-506-P26 Mmu-Mir-506-P27

Orthologues

Rno-Mir-506-P20

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66776760-66776815 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P20)

Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUCAUUAAAGUUCUUGUAUGCAGUGCUGUAUUCAGAUUGGUGCCUGUCAUGUUUAUAAGAAUGAAAGACACCAAGCUGAGUAGAGUAGGGCUUAUUGUGUUCUUCAUUGCAGGU

Get precursor sequence

Structure

        10          20        30        40        50       
UUCUCAUUAAAGUUCUU--|  U  AG    G       A      C  G    GUUU 
                   GUA GC  UGCU UAUUCAG UUGGUG CU UCAU    A
                   UAU CG  AUGA AUGAGUC AACCAC GA AGUA    U
UGGACGUUACUUCUUGUGU^  U  GG    G       G      A  A    AGAA 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-506-P20_5p*

mirBase accession

MIMAT0017263

Sequence

0- UAUUCAGAUUGGUGCCUGUCAU -22

Get sequence

Proposed targets

TargetScanVert: mmu-miR-743a-5p
miRDB: MIMAT0017263

Mature sequence

Mmu-Mir-506-P20_3p

mirBase accession

MIMAT0004238

Sequence

35- AAAGACACCAAGCUGAGUAGA -56

Get sequence

Proposed targets

microrna.org: MIMAT0004238
TargetScanVert: mmu-miR-743a-3p
miRDB: MIMAT0004238