MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-506-P19

Family name MIR-506 (all species)
Seed AAAGCCA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-742
Paralogues Mmu-Mir-506-P1  Mmu-Mir-506-P2  Mmu-Mir-506-P7  Mmu-Mir-506-P14  Mmu-Mir-506-P15a  Mmu-Mir-506-P15b1  Mmu-Mir-506-P15b2  Mmu-Mir-506-P15c1  Mmu-Mir-506-P15c2  Mmu-Mir-506-P15d  Mmu-Mir-506-P16  Mmu-Mir-506-P17  Mmu-Mir-506-P18  Mmu-Mir-506-P20  Mmu-Mir-506-P21  Mmu-Mir-506-P22  Mmu-Mir-506-P23  Mmu-Mir-506-P24  Mmu-Mir-506-P25  Mmu-Mir-506-P26  Mmu-Mir-506-P27 
Orthologues Rno-Mir-506-P19 
Node of Origin (locus) Muridae
Node of Origin (family) Eutheria
Genome context
(mm10)
chrX: 66780376-66780432 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P19)
Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGGUUCUAGAGUACCUGGGCAGUGCUCUACUCACAUGGUUGCUAAUCACGUGAAGUGUAGGUGAAAGCCACCAUGCUGGGUAAAGUAAAGCUCAUCAUGUUCUUCAUUUGUUGU
Get precursor sequence
Structure
        10          20        30         40        50        
GGCUGGUUCUAGAGUACC--     AG    C      -|     U   AA    GUGAA 
                    UGGGC  UGCU UACUCA CAUGGU GCU  UCAC     \
                    ACUCG  AUGA AUGGGU GUACCA CGA  AGUG     G
UGUUGUUUACUUCUUGUACU     AA    A      C^     C   A-    GAUGU 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-506-P19_5p*

mirBase accessionMIMAT0004838
Sequence
0- UACUCACAUGGUUGCUAAUCAC -22
Get sequence
Proposed targets microrna.org: MIMAT0004838
TargetScanVert: mmu-miR-742-5p
miRDB: MIMAT0004838
Mature sequence

Mmu-Mir-506-P19_3p

mirBase accessionMIMAT0004237
Sequence
35- GAAAGCCACCAUGCUGGGUAAA -57
Get sequence
Proposed targets microrna.org: MIMAT0004237
TargetScanVert: mmu-miR-742-3p
miRDB: MIMAT0004237