MirGeneDB ID | Ete-Let-7-P2c1 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Let-7-P1b
Ete-Let-7-P1c
Ete-Let-7-P1d
Ete-Let-7-P2a1
Ete-Let-7-P2a2
Ete-Let-7-P2a3
Ete-Let-7-P2b1
Ete-Let-7-P2b2
Ete-Let-7-P2b3
Ete-Let-7-P2c2
Ete-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2c1
Ami-Let-7-P2c1
Bge-Let-7
Bpl-Let-7
Bta-Let-7-P2c1
Cfa-Let-7-P2c1
Cgi-Let-7
Cli-Let-7-P2c1
Cmi-Let-7-P2c1
Cpi-Let-7-P2c1
Cpo-Let-7-P2c1
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2c1
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Gga-Let-7-P2c1
Gja-Let-7-P2c1
Hme-Let-7
Hsa-Let-7-P2c1
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2c1
Lgi-Let-7
Loc-Let-7-P2c1
Mdo-Let-7-P2c1
Mml-Let-7-P2c1
Mmu-Let-7-P2c1
Mun-Let-7-P2c1
Npo-Let-7
Oan-Let-7-P2c1
Obi-Let-7
Ocu-Let-7-P2c1
Ovu-Let-7
Pbv-Let-7-P2c1
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2c1
Sha-Let-7-P2c1
Sko-Let-7
Spt-Let-7-P2c1
Spu-Let-7
Sto-Let-7-P2c1
Tca-Let-7
Tgu-Let-7-P2c1
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (echTel2) |
JH980295: 91354546-91354620 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GACUAACAUGAAAAAAGUAGGUUCCUAGGAAGAGGUAGUAGGUUGCAUAGUUUUAGGGCAGGGAUUUUGCCCACAAGGAGGUAACUAUACGACCUGCUGCCUUUCUUAGGGCCUUAUUAUCCUGCAAUUAACUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GACUAACAUGAAAAAAG--| UU A C UUAGGGCAGGGAUU
UAGG CCUAGGA GAGGUAGUAGGUUG AUAGUU U
AUUC GGAUUCU UUCCGUCGUCCAGC UAUCAA U
AGUCAAUUAACGUCCUAUU^ CG - A UGGAGGAACACCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | This is a Group 2 in human according to Kim et al. (2017) but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Let-7-P2c1_5p |
mirBase accession | None |
Sequence |
0- AGAGGUAGUAGGUUGCAUAGUU -22
Get sequence
|
Star sequence |
Ete-Let-7-P2c1_3p* |
mirBase accession | None |
Sequence |
54- CUAUACGACCUGCUGCCUUUC -75
Get sequence
|