MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-154-P19

Family name MIR-154 (all species)
Seed AACAAAC
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-154-P1  Ete-Mir-154-P2-v1  Ete-Mir-154-P2-v2  Ete-Mir-154-P3a-v1  Ete-Mir-154-P3a-v2  Ete-Mir-154-P4a  Ete-Mir-154-P4b  Ete-Mir-154-P5  Ete-Mir-154-P6  Ete-Mir-154-P7  Ete-Mir-154-P8  Ete-Mir-154-P9  Ete-Mir-154-P10  Ete-Mir-154-P12  Ete-Mir-154-P13  Ete-Mir-154-P14  Ete-Mir-154-P16  Ete-Mir-154-P17  Ete-Mir-154-P18  Ete-Mir-154-P20-v1  Ete-Mir-154-P20-v2  Ete-Mir-154-P21  Ete-Mir-154-P22  Ete-Mir-154-P24  Ete-Mir-154-P25  Ete-Mir-154-P26  Ete-Mir-154-P27  Ete-Mir-154-P28  Ete-Mir-154-P29  Ete-Mir-154-P30  Ete-Mir-154-P31  Ete-Mir-154-P32  Ete-Mir-154-P36 
Orthologues Bta-Mir-154-P19  Cfa-Mir-154-P19  Cpo-Mir-154-P19  Dno-Mir-154-P19  Hsa-Mir-154-P19  Mml-Mir-154-P19  Mmu-Mir-154-P19  Ocu-Mir-154-P19  Rno-Mir-154-P19 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980297: 82304366-82304423 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUACCAGUAUUAGCCUCUGGCACCUGAAAAGAAGUUGCCCAUGUUAUUUUCGCUUUAUAUGUGACGAAACAAACAUGGUGCACUUCUUUUUCGGUACCAACUCUCACCCUGAAGAGCU
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Structure
        10          20        30         40        50        
CUACCAGUAUUAGCCUC--|  C   U          U  -       AU     CUUUA 
                   UGG ACC GAAAAGAAGU GC CCAUGUU  UUUCG     U
                   ACC UGG UUUUUCUUCA CG GGUACAA  AAAGC     A
UCGAGAAGUCCCACUCUCA^  A   C          -  U       AC     AGUGU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ete-Mir-154-P19_5p* (predicted)

mirBase accessionNone
Sequence
0- GAAGUUGCCCAUGUUAUUUUCG -22
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Mature sequence

Ete-Mir-154-P19_3p

mirBase accessionNone
Sequence
36- AAACAAACAUGGUGCACUUCUU -58
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