MirGeneDB ID | Ete-Mir-154-P7 |
Family name |
MIR-154 (all species) |
Seed |
GGUAGAC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-154-P1
Ete-Mir-154-P2-v1
Ete-Mir-154-P2-v2
Ete-Mir-154-P3a-v1
Ete-Mir-154-P3a-v2
Ete-Mir-154-P4a
Ete-Mir-154-P4b
Ete-Mir-154-P5
Ete-Mir-154-P6
Ete-Mir-154-P8
Ete-Mir-154-P9
Ete-Mir-154-P10
Ete-Mir-154-P12
Ete-Mir-154-P13
Ete-Mir-154-P14
Ete-Mir-154-P16
Ete-Mir-154-P17
Ete-Mir-154-P18
Ete-Mir-154-P19
Ete-Mir-154-P20-v1
Ete-Mir-154-P20-v2
Ete-Mir-154-P21
Ete-Mir-154-P22
Ete-Mir-154-P24
Ete-Mir-154-P25
Ete-Mir-154-P26
Ete-Mir-154-P27
Ete-Mir-154-P28
Ete-Mir-154-P29
Ete-Mir-154-P30
Ete-Mir-154-P31
Ete-Mir-154-P32
Ete-Mir-154-P36
|
Orthologues |
Bta-Mir-154-P7
Cfa-Mir-154-P7
Cpo-Mir-154-P7
Dno-Mir-154-P7
Hsa-Mir-154-P7
Mml-Mir-154-P7
Mmu-Mir-154-P7
Ocu-Mir-154-P7
Rno-Mir-154-P7
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82315445-82315503 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GUCAGUACCACUUCAUGGUUCCUGAAGAGAUGGUAGACUAUGGAACGUAGGCGUUAUGAUUUUUGACCUAUGUAACAUGGUCCACUAACUCUCAGGAUCCAAUCCAUCCUCGGAGGGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUCAGUACCACUUCAUGGU---| A A A GA CGUUAUG
UCCUGA GAG UGGU GACUAUG ACGUAGG \
AGGACU CUC AUCA CUGGUAC UGUAUCC A
ACGGGAGGCUCCUACCUAACCU^ - A C AA AGUUUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-154-P7_5p |
mirBase accession | None |
Sequence |
0- UGGUAGACUAUGGAACGUAGG -21
Get sequence
|
Co-mature sequence |
Ete-Mir-154-P7_3p |
mirBase accession | None |
Sequence |
38- UAUGUAACAUGGUCCACUAAC -59
Get sequence
|