MirGeneDB ID | Ete-Mir-154-P21 |
Family name |
MIR-154 (all species) |
Seed |
AUCCAAG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-154-P1
Ete-Mir-154-P2-v1
Ete-Mir-154-P2-v2
Ete-Mir-154-P3a-v1
Ete-Mir-154-P3a-v2
Ete-Mir-154-P4a
Ete-Mir-154-P4b
Ete-Mir-154-P5
Ete-Mir-154-P6
Ete-Mir-154-P7
Ete-Mir-154-P8
Ete-Mir-154-P9
Ete-Mir-154-P10
Ete-Mir-154-P12
Ete-Mir-154-P13
Ete-Mir-154-P14
Ete-Mir-154-P16
Ete-Mir-154-P17
Ete-Mir-154-P18
Ete-Mir-154-P19
Ete-Mir-154-P20-v1
Ete-Mir-154-P20-v2
Ete-Mir-154-P22
Ete-Mir-154-P24
Ete-Mir-154-P25
Ete-Mir-154-P26
Ete-Mir-154-P27
Ete-Mir-154-P28
Ete-Mir-154-P29
Ete-Mir-154-P30
Ete-Mir-154-P31
Ete-Mir-154-P32
Ete-Mir-154-P36
|
Orthologues |
Bta-Mir-154-P21
Cfa-Mir-154-P21
Cpo-Mir-154-P21
Dno-Mir-154-P21
Hsa-Mir-154-P21
Mml-Mir-154-P21
Mmu-Mir-154-P21
Ocu-Mir-154-P21
Rno-Mir-154-P21
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82294247-82294309 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UCUCCAGCCGGGUCGCUGUUUCCUACUUGAGGAGAAAUUACCCUUGGUGUGUUGGCUUUAUCACGACAAAUCAUCCAAGGACAAUUUCUUGUUGAGUAUCAAAUCCUGCCUCAGCGAUUUGUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUCCAGCCGGGUCGCU--| CC UG G AC U UUGGCUUUA
GUUU UACU A GAGAAAUU CCUUGG GUG U
UAAA AUGA U UUCUUUAA GGAACC UAC C
AUGUUUAGCGACUCCGUCC^ CU GU G CA - UAAACAGCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-154-P21_5p* |
mirBase accession | None |
Sequence |
0- GGAGAAAUUACCCUUGGUGUGUU -23
Get sequence
|
Mature sequence |
Ete-Mir-154-P21_3p |
mirBase accession | None |
Sequence |
41- CAUCCAAGGACAAUUUCUUGUU -63
Get sequence
|