MirGeneDB ID | Hme-Mir-9-o4 |
Family name |
MIR-9 (all species) |
Seed |
UAAAGCU |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
|
Paralogues |
Hme-Mir-9-o1
Hme-Mir-9-o2
Hme-Mir-9-o3
|
Orthologues |
Aca-Mir-9-P4
Ami-Mir-9-P4
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dre-Mir-9-P4a
Dre-Mir-9-P4b
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Mal-Mir-9-P4a
Mal-Mir-9-P4b
Mdo-Mir-9-P4
Mun-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ovu-Mir-9
Pbv-Mir-9-P4
Pma-Mir-9-o4
Pmi-Mir-9
Sha-Mir-9-P4
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
Tni-Mir-9-P4a
Tni-Mir-9-P4b
Xbo-Mir-9
Xla-Mir-9-P4c
Xla-Mir-9-P4d
Xtr-Mir-9-P4
|
Node of Origin (locus) |
H. melpomene
|
Node of Origin (family) |
Bilateria
|
Genome context (Hmel_1) |
HE671859: 114241-114299 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUCUUUUCAGCAUAUUUCACUUUUCGUGUAUUUGGUGAUUCAGCUUAUGACGUUACAAUAUACGUUAUAAAGCUGUUUCACUAAAUGUACGCGUAGUGAAAUUCAACAAAUGGUGUAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUCUUUUCAGCAUAUU-- UUU UU -| CGUUAC
UCACU CGUGUAUUUGGUGA CAGC UUAUGA A
AGUGA GCAUGUAAAUCACU GUCG AAUAUU A
AAUGUGGUAAACAACUUAA UGC UU A^ GCAUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hme-Mir-9-o4_5p* |
mirBase accession | None |
Sequence |
0- AUUUGGUGAUUCAGCUUAUGA -21
Get sequence
|
Mature sequence |
Hme-Mir-9-o4_3p |
mirBase accession | None |
Sequence |
37- AUAAAGCUGUUUCACUAAAUGU -59
Get sequence
|