Mir-1-P3

MirGeneDB ID

Mmu-Mir-1-P3

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-1a-1

Paralogues

Mmu-Mir-1-P1 Mmu-Mir-1-P2

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Hme-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mml-Mir-1-P3 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ovu-Mir-1 Pbv-Mir-1-P3 Pfl-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Sha-Mir-1-P3 Sko-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr2: 180389057-180389117 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P3)

Mir-1-P3 chr2: 180389057-180389117 [+] UCSC Ensembl
Mir-133-P3-v1 chr2: 180398400-180398459 [+] UCSC Ensembl
Mir-133-P3-v2 chr2: 180398400-180398459 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGUGCACACUGAACCUACCUGCUUGGGACACAUACUUCUUUAUAUGCCCAUAUGAACCUGCUAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGCUAGGAACUCUCUCGCCAGACUGA

Get precursor sequence

Structure

        10         20         30        40        50        60
UUGUGCACACUGAACCUA-   -|    GG C                GC     UGAACC 
                   CCU GCUUG  A ACAUACUUCUUUAUAU  CCAUA      U
                   GGA CGGAC  U UGUAUGAAGAAAUGUA  GGUAU      G
AGUCAGACCGCUCUCUCAA   U^    UU A                A-     CGAAUC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-1-P3_5p*

mirBase accession

MIMAT0016979

Sequence

0- ACAUACUUCUUUAUAUGCCCAUA -23

Get sequence

Proposed targets

TargetScanVert: mmu-miR-1a-1-5p
miRDB: MIMAT0016979

Mature sequence

Mmu-Mir-1-P3_3p

mirBase accession

MIMAT0000123

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

Get sequence

Proposed targets

microrna.org: MIMAT0000123
TargetScanVert: mmu-miR-1a-3p
miRDB: MIMAT0000123