MirGeneDB ID | Dre-Mir-153-P1a |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-153a
|
Paralogues |
Dre-Mir-153-P2a
Dre-Mir-153-P2b
|
Orthologues |
Aca-Mir-153-P1
Ami-Mir-153-P1
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Bta-Mir-153-P1
Cfa-Mir-153-P1
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P1
Cmi-Mir-153-P1
Cpi-Mir-153-P1
Cpo-Mir-153-P1
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P1
Dpu-Mir-153
Ete-Mir-153-P1
Gga-Mir-153-P1
Gja-Mir-153-P1
Gmo-Mir-153-P1a
Hsa-Mir-153-P1
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P1
Lgi-Mir-153
Loc-Mir-153-P1
Mal-Mir-153-P1a
Mdo-Mir-153-P1
Mml-Mir-153-P1
Mmu-Mir-153-P1
Mun-Mir-153-P1
Npo-Mir-153
Oan-Mir-153-P1
Obi-Mir-153
Ocu-Mir-153-P1
Ovu-Mir-153
Pbv-Mir-153-P1
Pfl-Mir-153
Pma-Mir-153-o1
Pmi-Mir-153
Rno-Mir-153-P1
Sha-Mir-153-P1
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P1
Spu-Mir-153
Sto-Mir-153-P1
Tgu-Mir-153-P1
Xbo-Mir-153
Xtr-Mir-153-P1
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr7: 40485520-40485580 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGUUGGCCAGCUAAUUAGCGGUUGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUUAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUAUCUCCUCUUCCAGGCCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGUUGGCCAGCUAAUUA G -| GU AGUUAU
GCGGUU CCAGUG UCAUUUUUGUGAU UGCAGCU A
UGUCAA GGUUAC AGUGAAAACACUG ACGUUGA U
CCCGGACCUUCUCCUCUA A U^ AU CCCGAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-153-P1a_5p* |
mirBase accession | MIMAT0031978 |
Sequence |
0- GUCAUUUUUGUGAUGUUGCAGCU -23
Get sequence
|
Mature sequence |
Dre-Mir-153-P1a_3p |
mirBase accession | MIMAT0001849 |
Sequence |
39- UUGCAUAGUCACAAAAGUGAUC -61
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-153a
|